DMR 27850 chr5:1875801-1877300 (1500bp)

DMR Stats
Positionchr5:1875801-1877300 (View on UCSC)
Width1500bp
Genomic Context3' end
Nearest GenesIRX4 (240bp away)
ANODEV p-value7.3366046242e-05
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27850 chr5 1874886 1875855 wgEncodeRegDnaseClusteredV2 41 score:997, srow:926466
27850 chr5 1875926 1876075 wgEncodeRegDnaseClusteredV2 3 score:228, srow:926467
27850 chr5 1876086 1877195 wgEncodeRegDnaseClusteredV2 32 score:612, srow:926468
27850 chr5 1874353 1879201 wgEncodeRegTfbsClusteredV3 EZH2 score:933, expCount:8, expNums:6,13,17,19,21,36,38,43, expScores:360,319,186,99,480,211,234,275, srow:3170852
27850 chr5 1875685 1876993 wgEncodeRegTfbsClusteredV3 SUZ12 score:176, expCount:1, expNums:578, expScores:129, srow:3170853
27850 chr5 1875868 1876537 wgEncodeRegTfbsClusteredV3 RBBP5 score:248, expCount:1, expNums:8, expScores:248, srow:3170854
27850 chr5 1876021 1876788 wgEncodeRegTfbsClusteredV3 POLR2A score:192, expCount:2, expNums:563,564, expScores:192,155, srow:3170855
27850 chr5 1876734 1877333 wgEncodeRegTfbsClusteredV3 CTBP2 score:123, expCount:1, expNums:348, expScores:123, srow:3170856
27850 chr5 1876807 1877182 wgEncodeRegTfbsClusteredV3 TCF7L2 score:238, expCount:1, expNums:363, expScores:238, srow:3170857
27850 chr5 1876068 1876097 tfbsConsSites V$HOX13_01 score:723, zScore:2, srow:3995866
27850 chr5 1876072 1876084 tfbsConsSites V$IRF1_01 score:827, zScore:2.05, srow:3995867
27850 chr5 1876072 1876084 tfbsConsSites V$IRF2_01 score:805, zScore:1.74, srow:3995868
27850 chr5 1876100 1876111 tfbsConsSites V$HFH1_01 score:862, zScore:1.7, srow:3995869
27850 chr5 1876157 1876180 tfbsConsSites V$HTF_01 score:774, zScore:1.94, srow:3995870
27850 chr5 1876161 1876177 tfbsConsSites V$XBP1_01 score:832, zScore:2.6, srow:3995871
27850 chr5 1876165 1876172 tfbsConsSites V$ATF6_01 score:882, zScore:1.88, srow:3995872
27850 chr5 1876173 1876186 tfbsConsSites V$CEBP_Q2 score:884, zScore:1.75, srow:3995873
27850 chr5 1876231 1876244 tfbsConsSites V$MEIS1AHOXA9_01 score:797, zScore:1.89, srow:3995874
27850 chr5 1876244 1876262 tfbsConsSites V$OCT1_01 score:802, zScore:2, srow:3995875
27850 chr5 1876269 1876279 tfbsConsSites V$EVI1_02 score:888, zScore:2.49, srow:3995876
27850 chr5 1876298 1876306 tfbsConsSites V$ZIC3_01 score:929, zScore:1.97, srow:3995877
27850 chr5 1876299 1876313 tfbsConsSites V$TAXCREB_01 score:790, zScore:1.94, srow:3995878
27850 chr5 1876300 1876309 tfbsConsSites V$NFKAPPAB50_01 score:869, zScore:1.84, srow:3995879
27850 chr5 1876304 1876315 tfbsConsSites V$AP2_Q6 score:889, zScore:1.88, srow:3995880
27850 chr5 1876314 1876331 tfbsConsSites V$CEBP_C score:829, zScore:2.19, srow:3995881
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Omics Overlaps

Dmrid Omic Set Data Plot
27850 cellmeth_recounts PrEC: 530, LNCaP: 310, DU145: 50
27850 cellmeth_diffreps_PrECvsLNCaP A=793, B=248, Length=1660, Event=Down, log2FC=-1.68, padj=0
27850 cellmeth_diffreps_PrECvsDU145 A=794, B=39, Length=1740, Event=Down, log2FC=-4.35, padj=0
27850 cellmeth_diffreps_LNCaPvsDU145 A=153.94, B=14.03, Length=1100, Event=Down, log2FC=-3.46, padj=0
27850 cellmeth_diffreps_LNCaPvsDU145 A=189.22, B=19.64, Length=1040, Event=Down, log2FC=-3.27, padj=0
27850 tcgameth site:cg04064644, B=0.4, L=0.59, H=0.58
27850 tcgameth site:cg07961015, B=0.44, L=0.67, H=0.67
27850 tcgameth site:cg14451382, B=0.43, L=0.61, H=0.59
27850 tcgameth site:cg14564616, B=0.28, L=0.57, H=0.52
27850 tcgameth site:cg18349911, B=0.42, L=0.6, H=0.56
27850 tcgameth site:cg18856388, B=0.25, L=0.65, H=0.6
27850 tcgameth site:cg21982950, B=0.36, L=0.58, H=0.56
27850 tcgameth site:cg23208176, B=0.35, L=0.58, H=0.54