DMR 27859 chr5:2754851-2755600 (750bp)

DMR Stats
Positionchr5:2754851-2755600 (View on UCSC)
Width750bp
Genomic Context3' end
Nearest GenesC5orf38 (0bp away)
ANODEV p-value0.00445473424423
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27859 C5orf38 22412 uc003jdc.3 chr5 2752262 2755511 + 661 88.13 0.51 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (38.93), E4 (49.2) 100.0
27859 C5orf38 22412 uc011cmg.2 chr5 2752262 2755511 + 661 88.13 0.51 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (38.93), E4 (49.2) 100.0
27859 C5orf38 22412 uc011cmh.2 chr5 2752262 2755511 + 661 88.13 1.52 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (38.93), E4 (49.2) 100.0
27859 C5orf38 22412 uc011cmi.2 chr5 2752262 2755511 + 661 88.13 1.15 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (38.93), E4 (49.2) 100.0
27859 C5orf38 22412 uc011cmj.3 chr5 2752262 2755511 + 661 88.13 0.51 0 0.0 E1 (0), I1 (38.93), E2 (49.2) 100.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27859 chr5 2754726 2755155 wgEncodeRegDnaseClusteredV2 15 score:552, srow:927228
27859 chr5 2755166 2755715 wgEncodeRegDnaseClusteredV2 39 score:873, srow:927229
27859 chr5 2753965 2754900 wgEncodeRegTfbsClusteredV3 EZH2 score:389, expCount:1, expNums:21, expScores:389, srow:3171451
27859 chr5 2755184 2755507 wgEncodeRegTfbsClusteredV3 BACH1 score:153, expCount:1, expNums:341, expScores:153, srow:3171452
27859 chr5 2755195 2755578 wgEncodeRegTfbsClusteredV3 CTCF score:982, expCount:21, expNums:0,5,14,37,137,267,595,597,609,635,636,639,642,643,657,658,671,682,685,686,688, expScores:833,223,131,214,266,172,184,982,369,336,483,482,147,191,333,101,546,150,141,394,702, srow:3171453
27859 chr5 2755255 2755498 wgEncodeRegTfbsClusteredV3 RAD21 score:856, expCount:2, expNums:149,355, expScores:856,364, srow:3171454
27859 chr5 2755522 2756061 wgEncodeRegTfbsClusteredV3 POLR2A score:308, expCount:1, expNums:563, expScores:308, srow:3171455
27859 chr5 2755366 2755378 tfbsConsSites V$MAZR_01 score:854, zScore:1.65, srow:3997681
27859 chr5 2755370 2755387 tfbsConsSites V$AP4_01 score:816, zScore:1.74, srow:3997682
27859 chr5 2755370 2755388 tfbsConsSites V$ER_Q6 score:823, zScore:2.47, srow:3997683
27859 chr5 2755377 2755396 tfbsConsSites V$ARNT_02 score:770, zScore:1.64, srow:3997684
27859 chr5 2755148 2755148 cosmic COSM1067204 srow:932031
27859 chr5 2755364 2755384 phastConsElements100way lod=71 score:415, srow:6895946
27859 chr5 2748369 2757024 cpgIsland CpG: 648 length:8656, cpgNum:648, gcNum:4969, perCpg:15, perGc:57.4, obsExp:0.91, srow:20533
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27859 cellmeth_recounts PrEC: 105, LNCaP: 1397, DU145: 10
27859 cellmeth_diffreps_PrECvsLNCaP A=249, B=1804, Length=2040, Event=Up, log2FC=2.86, padj=0
27859 cellmeth_diffreps_PrECvsDU145 A=240, B=16, Length=1320, Event=Down, log2FC=-3.91, padj=0
27859 cellmeth_diffreps_LNCaPvsDU145 A=1928.56, B=21.51, Length=2020, Event=Down, log2FC=-6.49, padj=0
27859 cellexp id=ENSG00000186493, name=C5orf38, PrEC=115, str=160, LNCaP=729, str=474, DU145=1, str=0
27859 tcgameth site:cg07851675, B=0.43, L=0.6, H=0.62
27859 tcgameth site:cg11337945, B=0.26, L=0.57, H=0.56
27859 tcgameth site:cg23164183, B=0.31, L=0.55, H=0.5
27859 tcgameth site:cg23248357, B=0.17, L=0.43, H=0.42
27859 tcgaexp gene=C5orf38, entrez=153571, pos=chr5:2752262-2755511(+), B=153, L=254, M=281, H=220