DMR 27867 chr5:3601201-3601350 (150bp)
| DMR Stats | |
|---|---|
| Position | chr5:3601201-3601350 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | IRX1 (0bp away) |
| ANODEV p-value | 0.0222278917113 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27867 | IRX1 | 22414 | uc003jde.3 | chr5 | 3596168 | 3601517 | + | 150 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27867 | chr5 | 3601221 | 3601230 | wgEncodeRegDnaseClusteredV2 | 2 | score:185, srow:927730 |
| 27867 | chr5 | 3601246 | 3601875 | wgEncodeRegDnaseClusteredV2 | 20 | score:301, srow:927731 |
| 27867 | chr5 | 3600672 | 3601341 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:224, expCount:1, expNums:8, expScores:224, srow:3171808 |
| 27867 | chr5 | 3601204 | 3601533 | wgEncodeRegTfbsClusteredV3 | MAX | score:181, expCount:1, expNums:352, expScores:181, srow:3171809 |
| 27867 | chr5 | 3601190 | 3601203 | tfbsConsSites | V$RREB1_01 | score:859, zScore:2.5, srow:3999946 |
| 27867 | chr5 | 3601222 | 3601229 | tfbsConsSites | V$NKX25_02 | score:947, zScore:2.34, srow:3999947 |
| 27867 | chr5 | 3601241 | 3601258 | tfbsConsSites | V$CEBP_C | score:847, zScore:2.57, srow:3999948 |
| 27867 | chr5 | 3601201 | 3601212 | phastConsElements100way | lod=60 | score:399, srow:6897773 |
| 27867 | chr5 | 3601217 | 3601224 | phastConsElements100way | lod=29 | score:327, srow:6897774 |
| 27867 | chr5 | 3601229 | 3601258 | phastConsElements100way | lod=107 | score:456, srow:6897775 |
| 27867 | chr5 | 3601279 | 3601312 | phastConsElements100way | lod=131 | score:476, srow:6897776 |
| 27867 | chr5 | 3594468 | 3603054 | cpgIsland | CpG: 584 | length:8587, cpgNum:584, gcNum:4912, perCpg:13.6, perGc:57.2, obsExp:0.83, srow:20542 |
- 12 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27867 | cellmeth_recounts | PrEC: 1, LNCaP: 31, DU145: 41 |  |
| 27867 | cellmeth_diffreps_PrECvsLNCaP | A=2, B=36, Length=540, Event=Up, log2FC=4.17, padj=8.45932211843612e-08 |  |
| 27867 | cellmeth_diffreps_PrECvsDU145 | A=4, B=126, Length=1520, Event=Up, log2FC=4.98, padj=0 |  |
| 27867 | cellexp | id=ENSG00000170549, name=IRX1, PrEC=3, str=9, LNCaP=0, str=0, DU145=0, str=0 |  |
| 27867 | tcgaexp | gene=IRX1, entrez=79192, pos=chr5:3596168-3601517(+), B=20, L=1, M=4, H=6 |  |