DMR 279 chr1:52881151-52881300 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:52881151-52881300 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | PRPF38A (0bp away) |
| ANODEV p-value | 0.00292154575791 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279 | PRPF38A | 885 | uc001ctv.4 | chr1 | 52870219 | 52883992 | + | 150 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0) | 0.0 |
| 279 | PRPF38A | 884 | uc001ctw.4 | chr1 | 52870219 | 52883992 | + | 150 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0) | 0.0 |
- 2 geness
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 279 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 1 |  |
| 279 | cellexp | id=ENSG00000134744, name=ZCCHC11, PrEC=2546, str=3460, LNCaP=2702, str=3502, DU145=2939, str=3185 |  |
| 279 | cellexp | id=ENSG00000134748, name=PRPF38A, PrEC=2481, str=1502, LNCaP=4692, str=5923, DU145=1889, str=1978 |  |
| 279 | tcgaexp | gene=PRPF38A, entrez=84950, pos=chr1:52870219-52883992(+), B=2180, L=2106, M=2122, H=2214 |  |
| 279 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |