DMR 27911 chr5:40680551-40682100 (1550bp)

DMR Stats
Positionchr5:40680551-40682100 (View on UCSC)
Width1550bp
Genomic Contextexon
Nearest GenesPTGER4 (0bp away)
ANODEV p-value7.90743699435e-09
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27911 PTGER4 22561 uc003jlz.3 chr5 40680032 40693837 + 1550 100.0 0.05 0 0.0 E1 (1.94), I1 (30.52), E2 (58.71), I2 (8.97), E3 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27911 chr5 40680126 40680655 wgEncodeRegDnaseClusteredV2 23 score:779, srow:940135
27911 chr5 40680661 40682490 wgEncodeRegDnaseClusteredV2 97 score:540, srow:940136
27911 chr5 40680105 40680608 wgEncodeRegTfbsClusteredV3 TCF7L2 score:250, expCount:1, expNums:414, expScores:250, srow:3208712
27911 chr5 40680748 40681191 wgEncodeRegTfbsClusteredV3 GATA2 score:129, expCount:1, expNums:459, expScores:129, srow:3208714
27911 chr5 40680815 40681464 wgEncodeRegTfbsClusteredV3 SMARCC1 score:216, expCount:1, expNums:371, expScores:216, srow:3208715
27911 chr5 40680879 40681342 wgEncodeRegTfbsClusteredV3 POLR2A score:151, expCount:1, expNums:206, expScores:151, srow:3208716
27911 chr5 40680956 40681425 wgEncodeRegTfbsClusteredV3 CTCF score:665, expCount:53, expNums:0,2,5,14,16,18,20,35,37,39,42,44,290,463,601,603,604,605,606,609,635,639,640,641,642,643,648,650,651,652,653,656,657,658,659,660,662,664,665,669,671,672,673,674,675,676,677,681,682,683,685,686,688, expScores:665,169,324,97,474,182,309,116,183,203,193,194,114,166,128,222,223,177,249,245,380,341,299,95,178,139,116,176,125,302,338,114,271,222,588,157,551,151,236,198,119,148,192,326,229,374,448,110,156,121,165,168,159, srow:3208717
27911 chr5 40681044 40681877 wgEncodeRegTfbsClusteredV3 EZH2 score:311, expCount:1, expNums:43, expScores:310, srow:3208718
27911 chr5 40681056 40681343 wgEncodeRegTfbsClusteredV3 RAD21 score:524, expCount:3, expNums:149,355,466, expScores:524,247,268, srow:3208719
27911 chr5 40681142 40681391 wgEncodeRegTfbsClusteredV3 TEAD4 score:227, expCount:1, expNums:160, expScores:227, srow:3208720
27911 chr5 40681224 40681823 wgEncodeRegTfbsClusteredV3 CTBP2 score:123, expCount:1, expNums:348, expScores:123, srow:3208721
27911 chr5 40681419 40681777 wgEncodeRegTfbsClusteredV3 MAX score:231, expCount:2, expNums:352,576, expScores:155,231, srow:3208722
27911 chr5 40681455 40682124 wgEncodeRegTfbsClusteredV3 RBBP5 score:182, expCount:1, expNums:8, expScores:182, srow:3208723
27911 chr5 40681511 40681820 wgEncodeRegTfbsClusteredV3 SUZ12 score:122, expCount:1, expNums:358, expScores:122, srow:3208724
27911 chr5 40681737 40682332 wgEncodeRegTfbsClusteredV3 TCF7L2 score:296, expCount:1, expNums:581, expScores:296, srow:3208725
27911 chr5 40681748 40682091 wgEncodeRegTfbsClusteredV3 MXI1 score:175, expCount:1, expNums:353, expScores:175, srow:3208726
27911 chr5 40681752 40682191 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:111, expCount:1, expNums:250, expScores:111, srow:3208727
27911 chr5 40680575 40680587 tfbsConsSites V$AREB6_01 score:900, zScore:2.01, srow:4052481
27911 chr5 40680751 40680772 tfbsConsSites V$OLF1_01 score:799, zScore:1.75, srow:4052482
27911 chr5 40680837 40680850 tfbsConsSites V$FOXJ2_02 score:881, zScore:2.42, srow:4052483
27911 chr5 40681170 40681187 tfbsConsSites V$FOXJ2_01 score:877, zScore:1.66, srow:4052484
27911 chr5 40681171 40681186 tfbsConsSites V$FREAC2_01 score:828, zScore:2.01, srow:4052485
27911 chr5 40681183 40681206 tfbsConsSites V$STAT5A_02 score:751, zScore:1.79, srow:4052486
27911 chr5 40681184 40681197 tfbsConsSites V$FAC1_01 score:835, zScore:1.68, srow:4052487
27911 chr5 40681186 40681194 tfbsConsSites V$ZIC1_01 score:922, zScore:1.84, srow:4052488
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  • 25 of 144 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27911 cellmeth_recounts PrEC: 45, LNCaP: 1237, DU145: 168
27911 cellmeth_diffreps_PrECvsLNCaP A=69, B=986, Length=1860, Event=Up, log2FC=3.84, padj=0
27911 cellmeth_diffreps_PrECvsDU145 A=1, B=49, Length=520, Event=Up, log2FC=5.61, padj=1.81026532871928e-12
27911 cellmeth_diffreps_LNCaPvsDU145 A=96.21, B=6.55, Length=460, Event=Down, log2FC=-3.88, padj=0
27911 cellmeth_diffreps_LNCaPvsDU145 A=7.48, B=33.67, Length=260, Event=Up, log2FC=2.17, padj=0.00268174810385127
27911 cellmeth_diffreps_LNCaPvsDU145 A=957.86, B=92.61, Length=1340, Event=Down, log2FC=-3.37, padj=0
27911 cellexp id=ENSG00000171522, name=PTGER4, PrEC=755, str=617, LNCaP=228, str=221, DU145=501, str=1126
27911 tcgameth site:cg05971966, B=0.23, L=0.66, H=0.63
27911 tcgameth site:cg16104076, B=0.62, L=0.76, H=0.72
27911 tcgameth site:cg26597539, B=0.13, L=0.43, H=0.38
27911 tcgameth site:cg27071460, B=0.34, L=0.63, H=0.62
27911 tcgaexp gene=PTGER4, entrez=5734, pos=chr5:40680032-40693837(+), B=619, L=383, M=566, H=557