DMR 27942 chr5:54516151-54517150 (1000bp)

DMR Stats
Positionchr5:54516151-54517150 (View on UCSC)
Width1000bp
Genomic Context3' end
Nearest GenesMCIDAS (0bp away)
ANODEV p-value9.08598027582e-06
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27942 MCIDAS 22631 uc021xyp.1 chr5 54515425 54523143 - 1000 100.0 0.01 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (19.7), E6 (11.1), I6 (21), E7 (48.4) 27.4
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27942 chr5 54516006 54516995 wgEncodeRegDnaseClusteredV2 52 score:851, srow:943049
27942 chr5 54517101 54517315 wgEncodeRegDnaseClusteredV2 4 score:241, srow:943050
27942 chr5 54516072 54516391 wgEncodeRegTfbsClusteredV3 EZH2 score:131, expCount:1, expNums:3, expScores:131, srow:3220139
27942 chr5 54516127 54516998 wgEncodeRegTfbsClusteredV3 RBBP5 score:270, expCount:1, expNums:8, expScores:196, srow:3220140
27942 chr5 54516282 54516625 wgEncodeRegTfbsClusteredV3 GABPA score:254, expCount:1, expNums:140, expScores:254, srow:3220141
27942 chr5 54516286 54516621 wgEncodeRegTfbsClusteredV3 YY1 score:225, expCount:1, expNums:162, expScores:225, srow:3220142
27942 chr5 54516312 54516831 wgEncodeRegTfbsClusteredV3 SIN3A score:205, expCount:1, expNums:357, expScores:205, srow:3220143
27942 chr5 54516327 54516926 wgEncodeRegTfbsClusteredV3 CTBP2 score:246, expCount:1, expNums:348, expScores:246, srow:3220144
27942 chr5 54516381 54516756 wgEncodeRegTfbsClusteredV3 TBP score:146, expCount:1, expNums:359, expScores:146, srow:3220145
27942 chr5 54516430 54517330 wgEncodeRegTfbsClusteredV3 EZH2 score:629, expCount:7, expNums:6,19,21,36,38,40,43, expScores:629,99,545,341,421,320,615, srow:3220146
27942 chr5 54516456 54516885 wgEncodeRegTfbsClusteredV3 CTCF score:458, expCount:20, expNums:5,44,137,597,609,618,628,629,630,635,642,646,657,659,661,675,676,677,685,688, expScores:401,126,244,277,235,111,289,258,190,183,189,117,137,207,101,206,273,149,216,458, srow:3220147
27942 chr5 54516551 54516794 wgEncodeRegTfbsClusteredV3 RAD21 score:626, expCount:2, expNums:149,355, expScores:626,220, srow:3220148
27942 chr5 54516793 54517122 wgEncodeRegTfbsClusteredV3 MAX score:269, expCount:1, expNums:352, expScores:269, srow:3220149
27942 chr5 54516796 54517071 wgEncodeRegTfbsClusteredV3 USF2 score:238, expCount:1, expNums:360, expScores:238, srow:3220150
27942 chr5 54516840 54517149 wgEncodeRegTfbsClusteredV3 SUZ12 score:134, expCount:1, expNums:358, expScores:134, srow:3220151
27942 chr5 54516859 54517053 wgEncodeRegTfbsClusteredV3 USF1 score:1000, expCount:1, expNums:161, expScores:1000, srow:3220152
27942 chr5 54516201 54516211 tfbsConsSites V$NFE2_01 score:859, zScore:1.66, srow:4073416
27942 chr5 54516290 54516310 tfbsConsSites V$NRSF_01 score:718, zScore:1.85, srow:4073417
27942 chr5 54516293 54516302 tfbsConsSites V$GATA1_01 score:944, zScore:1.8, srow:4073418
27942 chr5 54516293 54516302 tfbsConsSites V$GATA2_01 score:956, zScore:2.02, srow:4073419
27942 chr5 54516293 54516308 tfbsConsSites V$AHRARNT_01 score:857, zScore:2.2, srow:4073420
27942 chr5 54516323 54516345 tfbsConsSites V$PPARG_02 score:766, zScore:3.21, srow:4073421
27942 chr5 54516325 54516343 tfbsConsSites V$ER_Q6 score:805, zScore:2.16, srow:4073422
27942 chr5 54516332 54516346 tfbsConsSites V$BACH1_01 score:792, zScore:1.65, srow:4073423
27942 chr5 54516335 54516343 tfbsConsSites V$AP1_C score:953, zScore:2.12, srow:4073424
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  • 25 of 85 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27942 cellmeth_recounts PrEC: 53, LNCaP: 100, DU145: 24
27942 cellmeth_diffreps_PrECvsLNCaP A=41, B=12, Length=220, Event=Down, log2FC=-1.77, padj=0.0015330606741099
27942 cellmeth_diffreps_PrECvsDU145 A=44, B=6, Length=380, Event=Down, log2FC=-2.87, padj=9.62946709699244e-07
27942 cellmeth_diffreps_PrECvsDU145 A=19, B=2, Length=200, Event=Down, log2FC=-3.25, padj=0.00246615340682178
27942 cellmeth_diffreps_LNCaPvsDU145 A=18.17, B=1.87, Length=200, Event=Down, log2FC=-3.28, padj=0.00779054669185256
27942 cellmeth_diffreps_LNCaPvsDU145 A=59.87, B=12.16, Length=560, Event=Down, log2FC=-2.3, padj=1.29184784712487e-06
27942 cellexp id=ENSG00000234602, name=MCIDAS, PrEC=88, str=12, LNCaP=15, str=44, DU145=178, str=285
27942 tcgameth site:cg05746227, B=0.35, L=0.58, H=0.56
27942 tcgameth site:cg10932018, B=0.39, L=0.75, H=0.72
27942 tcgameth site:cg14608384, B=0.27, L=0.56, H=0.53
27942 tcgameth site:cg15335436, B=0.48, L=0.61, H=0.6
27942 tcgameth site:cg18456523, B=0.36, L=0.8, H=0.76