DMR 27961 chr5:63256851-63257250 (400bp)

DMR Stats
Positionchr5:63256851-63257250 (View on UCSC)
Width400bp
Genomic Context3' end
Nearest GenesHTR1A (0bp away)
ANODEV p-value0.00373522847968
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27961 HTR1A 22677 uc011cqt.3 chr5 63255875 63258119 - 400 100.0 0.03 0 0.0 E1 (100) 6.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27961 chr5 63256541 63256955 wgEncodeRegDnaseClusteredV2 7 score:262, srow:946441
27961 chr5 63256986 63257255 wgEncodeRegDnaseClusteredV2 2 score:161, srow:946442
27961 chr5 63257076 63257850 wgEncodeRegTfbsClusteredV3 EZH2 score:289, expCount:2, expNums:15,40, expScores:289,222, srow:3232595
27961 chr5 63256856 63256869 tfbsConsSites V$MEIS1AHOXA9_01 score:831, zScore:2.56, srow:4091470
27961 chr5 63256865 63256882 tfbsConsSites V$IRF7_01 score:811, zScore:1.93, srow:4091471
27961 chr5 63256873 63256880 tfbsConsSites V$STAT3_02 score:985, zScore:1.64, srow:4091472
27961 chr5 63256939 63256946 tfbsConsSites V$E2F_02 score:885, zScore:1.84, srow:4091473
27961 chr5 63257002 63257029 tfbsConsSites V$PAX5_02 score:771, zScore:1.82, srow:4091474
27961 chr5 63257004 63257019 tfbsConsSites V$ELK1_01 score:874, zScore:2.29, srow:4091475
27961 chr5 63257004 63257024 tfbsConsSites V$STAT3_01 score:751, zScore:1.71, srow:4091476
27961 chr5 63257006 63257026 tfbsConsSites V$PAX4_01 score:807, zScore:1.82, srow:4091477
27961 chr5 63257007 63257016 tfbsConsSites V$NRF2_01 score:937, zScore:2.44, srow:4091478
27961 chr5 63257014 63257027 tfbsConsSites V$CEBPB_02 score:856, zScore:1.85, srow:4091479
27961 chr5 63257016 63257030 tfbsConsSites V$TAXCREB_01 score:792, zScore:1.97, srow:4091480
27961 chr5 63257028 63257039 tfbsConsSites V$EGR1_01 score:835, zScore:1.78, srow:4091481
27961 chr5 63257028 63257039 tfbsConsSites V$EGR3_01 score:861, zScore:2.28, srow:4091482
27961 chr5 63257054 63257067 tfbsConsSites V$CHX10_01 score:800, zScore:1.65, srow:4091483
27961 chr5 63257063 63257072 tfbsConsSites V$USF_Q6 score:900, zScore:1.77, srow:4091484
27961 chr5 63257065 63257074 tfbsConsSites V$HMX1_01 score:817, zScore:1.8, srow:4091485
27961 chr5 63257071 63257084 tfbsConsSites V$GATA1_03 score:883, zScore:2.41, srow:4091486
27961 chr5 63257104 63257117 tfbsConsSites V$FOXO3_01 score:884, zScore:2.71, srow:4091487
27961 chr5 63257104 63257117 tfbsConsSites V$FOXO4_02 score:856, zScore:2.38, srow:4091488
27961 chr5 63257144 63257162 tfbsConsSites V$PAX2_01 score:829, zScore:2.99, srow:4091489
27961 chr5 63257153 63257167 tfbsConsSites V$TAXCREB_01 score:783, zScore:1.81, srow:4091490
27961 chr5 63257154 63257163 tfbsConsSites V$GATA1_01 score:988, zScore:2.57, srow:4091491
  • Page 1 of 5
  • 25 of 104 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27961 cellmeth_recounts PrEC: 7, LNCaP: 30, DU145: 56
27961 cellexp id=ENSG00000178394, name=HTR1A, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
27961 cellexp id=ENSG00000248285, name=RP11-158J3.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
27961 tcgameth site:cg04799838, B=0.23, L=0.27, H=0.25
27961 tcgameth site:cg27615388, B=0.14, L=0.36, H=0.34
27961 tcgaexp gene=HTR1A, entrez=3350, pos=chr5:63255875-63258119(-), B=1, L=0, M=0, H=0