DMR 28000 chr5:76924101-76924450 (350bp)

DMR Stats
Positionchr5:76924101-76924450 (View on UCSC)
Width350bp
Genomic Context3' end
Nearest GenesOTP (86bp away)
ANODEV p-value0.00080716081511
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28000 chr5 76923586 76924350 wgEncodeRegDnaseClusteredV2 31 score:560, srow:951815
28000 chr5 76923519 76924732 wgEncodeRegTfbsClusteredV3 EZH2 score:879, expCount:6, expNums:6,15,21,36,38,43, expScores:879,260,329,226,197,466, srow:3250898
28000 chr5 76924003 76924312 wgEncodeRegTfbsClusteredV3 SUZ12 score:256, expCount:1, expNums:358, expScores:256, srow:3250901
28000 chr5 76924048 76924307 wgEncodeRegTfbsClusteredV3 CTCF score:122, expCount:2, expNums:603,651, expScores:122,99, srow:3250902
28000 chr5 76924182 76924194 tfbsConsSites V$MAZR_01 score:869, zScore:1.86, srow:4117320
28000 chr5 76923888 76924502 cpgIsland CpG: 60 length:615, cpgNum:60, gcNum:424, perCpg:19.5, perGc:68.9, obsExp:0.83, srow:20819
  • 6 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28000 cellmeth_recounts PrEC: 1, LNCaP: 335, DU145: 36
28000 cellmeth_diffreps_PrECvsLNCaP A=5, B=327, Length=920, Event=Up, log2FC=6.03, padj=0
28000 cellmeth_diffreps_PrECvsDU145 A=1, B=23, Length=360, Event=Up, log2FC=4.52, padj=3.84450226825195e-05
28000 cellmeth_diffreps_LNCaPvsDU145 A=349.58, B=38.35, Length=900, Event=Down, log2FC=-3.19, padj=0
28000 tcgameth site:cg17555825, B=0.21, L=0.54, H=0.56