DMR 28021 chr5:79330251-79330400 (150bp)

DMR Stats
Positionchr5:79330251-79330400 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesTHBS4 (769bp away)
ANODEV p-value0.0496434222479
FrequenciesBenign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28021 chr5 79330341 79330435 wgEncodeRegDnaseClusteredV2 2 score:115, srow:952999
28021 chr5 79330314 79330328 tfbsConsSites V$CDP_02 score:820, zScore:1.79, srow:4123175
28021 chr5 79328929 79330928 cpgShore — values(x.gr)[overs$srow, ]:37675
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28021 cellmeth_recounts PrEC: 5, LNCaP: 112, DU145: 0
28021 cellmeth_diffreps_PrECvsLNCaP A=9, B=1798, Length=1860, Event=Up, log2FC=7.64, padj=0
28021 cellmeth_diffreps_LNCaPvsDU145 A=1922.14, B=2.81, Length=1860, Event=Down, log2FC=-9.42, padj=0
28021 cellexp id=ENSG00000113296, name=THBS4, PrEC=11, str=11, LNCaP=62, str=35, DU145=27, str=24
28021 tcgameth site:cg00123072, B=0.92, L=0.91, H=0.88