DMR 28023 chr5:79378001-79378150 (150bp)

DMR Stats
Positionchr5:79378001-79378150 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesBC047373, THBS4 (0bp away)
ANODEV p-value0.00375492762427
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28023 BC047373 22833 uc003kgi.4 chr5 79362172 79379477 - 150 100.0 1.99 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
28023 THBS4 22832 uc021yaw.1 chr5 79331170 79379107 + 150 100.0 0.46 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (100), E21 (0), I21 (0), E22 (0) 28.67
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28023 chr5 79377586 79378055 wgEncodeRegDnaseClusteredV2 4 score:228, srow:953031
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
28023 cellmeth_recounts PrEC: 5, LNCaP: 4, DU145: 4
28023 cellmeth_diffreps_PrECvsLNCaP A=31, B=4, Length=360, Event=Down, log2FC=-2.95, padj=5.83103587998984e-05
28023 cellmeth_diffreps_PrECvsDU145 A=31, B=6, Length=360, Event=Down, log2FC=-2.37, padj=0.00079408460463882
28023 cellexp id=ENSG00000113296, name=THBS4, PrEC=11, str=11, LNCaP=62, str=35, DU145=27, str=24
28023 cellexp id=ENSG00000249825, name=CTD-2201I18.1, PrEC=2, str=5, LNCaP=12, str=7, DU145=1, str=0
28023 tcgaexp gene=THBS4, entrez=7060, pos=chr5:79331170-79379107(+), B=1524, L=3572, M=4287, H=5299