DMR Stats
Positionchr5:107004851-107005250 (View on UCSC)
Width400bp
Genomic Contextintron
Nearest GenesEFNA5 (0bp away)
ANODEV p-value8.20697537707e-10
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28068 EFNA5 22941 uc003kol.3 chr5 106712590 107006596 - 400 100.0 0.01 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
28068 EFNA5 22941 uc010jbr.1 chr5 106762677 107006596 - 400 100.0 0.01 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28068 chr5 107004461 107004955 wgEncodeRegDnaseClusteredV2 51 score:425, srow:960474
28068 chr5 107004966 107005715 wgEncodeRegDnaseClusteredV2 79 score:1000, srow:960475
28068 chr5 107004462 107004897 wgEncodeRegTfbsClusteredV3 CHD1 score:152, expCount:1, expNums:287, expScores:152, srow:3281978
28068 chr5 107004793 107005312 wgEncodeRegTfbsClusteredV3 SIN3A score:180, expCount:1, expNums:357, expScores:180, srow:3281979
28068 chr5 107004918 107005373 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:108, expCount:2, expNums:250,253, expScores:108,105, srow:3281980
28068 chr5 107004998 107005007 tfbsConsSites V$MYB_Q6 score:912, zScore:1.69, srow:4179953
28068 chr5 107004998 107005021 tfbsConsSites V$HTF_01 score:783, zScore:2.12, srow:4179954
28068 chr5 107004966 107004970 phastConsElements100way lod=13 score:247, srow:7198498
28068 chr5 107005131 107008191 cpgIsland CpG: 256 length:3061, cpgNum:256, gcNum:1895, perCpg:16.7, perGc:61.9, obsExp:0.88, srow:20916
28068 chr5 107003131 107005130 cpgShore values(x.gr)[overs$srow, ]:37814
  • 10 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28068 cellmeth_recounts PrEC: 2, LNCaP: 20, DU145: 0
28068 cellmeth_diffreps_LNCaPvsDU145 A=11.76, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00547907730955432
28068 cellexp id=ENSG00000184349, name=EFNA5, PrEC=892, str=910, LNCaP=7004, str=7141, DU145=2867, str=2789
28068 tcgaexp gene=EFNA5, entrez=1946, pos=chr5:106712590-107006596(-), B=998, L=638, M=537, H=572