DMR 28074 chr5:115151201-115152800 (1600bp)

DMR Stats
Positionchr5:115151201-115152800 (View on UCSC)
Width1600bp
Genomic Contextpromoter
Nearest GenesCDO1 (0bp away)
ANODEV p-value0.000591612111638
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28074 CDO1 22989 uc003krg.3 chr5 115140430 115152405 - 1205 75.31 0.01 0 55.94 E1 (30.06), I1 (45.25), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28074 chr5 115151221 115151795 wgEncodeRegDnaseClusteredV2 28 score:321, srow:963185
28074 chr5 115151806 115152735 wgEncodeRegDnaseClusteredV2 91 score:784, srow:963186
28074 chr5 115150923 115152439 wgEncodeRegTfbsClusteredV3 EZH2 score:356, expCount:7, expNums:3,15,17,36,38,40,43, expScores:149,356,191,239,231,275,264, srow:3291170
28074 chr5 115151168 115152461 wgEncodeRegTfbsClusteredV3 ZNF263 score:1000, expCount:2, expNums:368,553, expScores:388,178, srow:3291171
28074 chr5 115151173 115151442 wgEncodeRegTfbsClusteredV3 CTCF score:136, expCount:2, expNums:5,644, expScores:112,136, srow:3291172
28074 chr5 115151592 115151907 wgEncodeRegTfbsClusteredV3 GABPA score:211, expCount:1, expNums:180, expScores:211, srow:3291173
28074 chr5 115151716 115152604 wgEncodeRegTfbsClusteredV3 RBBP5 score:236, expCount:1, expNums:8, expScores:209, srow:3291174
28074 chr5 115151966 115152734 wgEncodeRegTfbsClusteredV3 POLR2A score:923, expCount:12, expNums:146,147,191,192,256,259,445,446,465,610,616,637, expScores:470,847,765,904,261,398,219,923,230,249,220,155, srow:3291175
28074 chr5 115152110 115152519 wgEncodeRegTfbsClusteredV3 GATA2 score:285, expCount:1, expNums:586, expScores:285, srow:3291176
28074 chr5 115152125 115152488 wgEncodeRegTfbsClusteredV3 GTF2F1 score:139, expCount:1, expNums:349, expScores:139, srow:3291177
28074 chr5 115152142 115152411 wgEncodeRegTfbsClusteredV3 REST score:189, expCount:1, expNums:257, expScores:189, srow:3291178
28074 chr5 115152142 115152620 wgEncodeRegTfbsClusteredV3 TAF1 score:886, expCount:1, expNums:157, expScores:172, srow:3291179
28074 chr5 115152181 115152570 wgEncodeRegTfbsClusteredV3 MAZ score:153, expCount:1, expNums:440, expScores:153, srow:3291180
28074 chr5 115152214 115152693 wgEncodeRegTfbsClusteredV3 CHD1 score:228, expCount:1, expNums:344, expScores:228, srow:3291181
28074 chr5 115152257 115152757 wgEncodeRegTfbsClusteredV3 TBP score:809, expCount:2, expNums:359,452, expScores:625,187, srow:3291182
28074 chr5 115152295 115152614 wgEncodeRegTfbsClusteredV3 JUND score:378, expCount:1, expNums:350, expScores:378, srow:3291183
28074 chr5 115152358 115152667 wgEncodeRegTfbsClusteredV3 EP300 score:294, expCount:1, expNums:145, expScores:294, srow:3291184
28074 chr5 115152391 115152686 wgEncodeRegTfbsClusteredV3 BHLHE40 score:584, expCount:1, expNums:423, expScores:584, srow:3291185
28074 chr5 115152494 115152829 wgEncodeRegTfbsClusteredV3 YY1 score:212, expCount:1, expNums:162, expScores:212, srow:3291186
28074 chr5 115152550 115152869 wgEncodeRegTfbsClusteredV3 EZH2 score:142, expCount:1, expNums:3, expScores:142, srow:3291187
28074 chr5 115151918 115151930 tfbsConsSites V$AREB6_01 score:922, zScore:2.37, srow:4193346
28074 chr5 115152372 115152386 tfbsConsSites V$TATA_01 score:888, zScore:2.13, srow:4193347
28074 chr5 115152408 115152417 tfbsConsSites V$MYB_Q6 score:918, zScore:1.8, srow:4193348
28074 chr5 115151936 115151936 cosmic COSM1059864 srow:961958
28074 chr5 115151980 115151980 cosmic COSM1059865 srow:961959
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  • 25 of 48 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28074 cellmeth_recounts PrEC: 3, LNCaP: 452, DU145: 106
28074 cellmeth_diffreps_PrECvsLNCaP A=4, B=359, Length=1640, Event=Up, log2FC=6.49, padj=0
28074 cellmeth_diffreps_PrECvsDU145 A=0, B=43, Length=700, Event=Up, log2FC=Inf, padj=1.71533857038722e-12
28074 cellmeth_diffreps_PrECvsDU145 A=0, B=24, Length=420, Event=Up, log2FC=Inf, padj=7.04363068954791e-07
28074 cellmeth_diffreps_LNCaPvsDU145 A=370.96, B=72.96, Length=1360, Event=Down, log2FC=-2.35, padj=0
28074 cellexp id=ENSG00000129596, name=CDO1, PrEC=0, str=0, LNCaP=0, str=0, DU145=1, str=2
28074 tcgameth site:cg02792792, B=0.16, L=0.38, H=0.47
28074 tcgameth site:cg07405021, B=0.15, L=0.3, H=0.34
28074 tcgameth site:cg07644368, B=0.33, L=0.45, H=0.56
28074 tcgameth site:cg07712493, B=0.15, L=0.32, H=0.34
28074 tcgameth site:cg08516516, B=0.05, L=0.33, H=0.39
28074 tcgameth site:cg11036833, B=0.11, L=0.37, H=0.44
28074 tcgameth site:cg12880658, B=0.15, L=0.36, H=0.44
28074 tcgameth site:cg14470895, B=0.08, L=0.37, H=0.47
28074 tcgameth site:cg16265906, B=0.13, L=0.3, H=0.37
28074 tcgameth site:cg16707405, B=0.08, L=0.33, H=0.42
28074 tcgameth site:cg23180938, B=0.07, L=0.4, H=0.49
28074 tcgaexp gene=CDO1, entrez=1036, pos=chr5:115140430-115152405(-), B=2555, L=1108, M=688, H=440