DMR 28225 chr5:140810051-140812100 (2050bp)

DMR Stats
Positionchr5:140810051-140812100 (View on UCSC)
Width2050bp
Genomic Contextpromoter
Nearest GenesPCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11, PCDHGA12 (0bp away)
ANODEV p-value3.44880146891e-06
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28225 PCDHGA1 23222 uc003lji.2 chr5 140710252 140892548 + 2050 100.0 0.1 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA2 23222 uc003ljk.2 chr5 140718354 140892548 + 2050 100.0 0.13 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA3 23222 uc003ljm.2 chr5 140723601 140892548 + 2050 100.0 0.08 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGB1 23222 uc003ljo.2 chr5 140729828 140892548 + 2050 100.0 0.08 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA4 23222 uc003ljq.2 chr5 140734768 140892548 + 2050 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGB2 23222 uc003ljs.2 chr5 140739703 140892548 + 2050 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA5 23222 uc003lju.2 chr5 140743898 140892548 + 2050 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGB3 23222 uc003ljw.2 chr5 140749962 140892548 + 2050 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA6 23222 uc003ljy.2 chr5 140753651 140892548 + 2050 100.0 0.06 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA7 23222 uc003lka.2 chr5 140762467 140892548 + 2050 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGB4 23222 uc003lkc.2 chr5 140767452 140892548 + 2050 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA8 23222 uc003lkd.2 chr5 140771483 140892548 + 2050 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGB5 23222 uc003lkf.2 chr5 140777695 140892548 + 2050 100.0 0.03 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA9 23222 uc003lkh.2 chr5 140782520 140892548 + 2050 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGB6 23222 uc003lkj.2 chr5 140787770 140892548 + 2050 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA10 23222 uc003lkl.2 chr5 140792743 140892548 + 2050 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGB7 23222 uc003lkn.2 chr5 140797260 140892548 + 2050 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA11 23222 uc003lkp.2 chr5 140800537 140892548 + 2050 100.0 3.39 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA11 23222 uc003lkq.2 chr5 140800537 140892548 + 2050 100.0 0.01 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA12 23222 uc003lkt.2 chr5 140810158 140892548 + 1943 94.78 0.01 0 29.61 E1 (94.78), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
28225 PCDHGA12 23222 uc011dba.2 chr5 140810158 140812789 + 1943 94.78 0.01 0 29.61 E1 (94.78) 15.17
  • 21 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28225 chr5 140809961 140810835 wgEncodeRegDnaseClusteredV2 103 score:1000, srow:974661
28225 chr5 140810941 140811475 wgEncodeRegDnaseClusteredV2 48 score:385, srow:974662
28225 chr5 140811666 140811950 wgEncodeRegDnaseClusteredV2 5 score:154, srow:974663
28225 chr5 140809857 140810296 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:84, expNums:0,2,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,290,463,493,595,597,598,601,603,604,605,606,607,612,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,665,668,669,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686, expScores:142,656,126,360,617,478,785,419,447,1000,833,558,1000,240,307,105,172,315,921,1000,1000,926,157,901,525,752,246,1000,242,249,321,144,1000,365,442,536,584,355,950,940,445,224,515,349,749,622,1000,872,142,656,393,1000,1000,1000,1000,368,309,450,520,551,1000,692,1000,1000,743,180,226,448,689,1000,1000,936,232,483,356,770,119,369,351,840,395,544,565,362, srow:3333290
28225 chr5 140809862 140810221 wgEncodeRegTfbsClusteredV3 ARID3A score:199, expCount:1, expNums:467, expScores:199, srow:3333291
28225 chr5 140809929 140810282 wgEncodeRegTfbsClusteredV3 MYC score:253, expCount:2, expNums:560,575, expScores:166,253, srow:3333292
28225 chr5 140809946 140810215 wgEncodeRegTfbsClusteredV3 SMC3 score:387, expCount:1, expNums:313, expScores:387, srow:3333293
28225 chr5 140809951 140810294 wgEncodeRegTfbsClusteredV3 YY1 score:154, expCount:1, expNums:119, expScores:154, srow:3333294
28225 chr5 140809953 140810242 wgEncodeRegTfbsClusteredV3 ZNF143 score:395, expCount:1, expNums:322, expScores:395, srow:3333295
28225 chr5 140809970 140810263 wgEncodeRegTfbsClusteredV3 MAX score:189, expCount:2, expNums:460,576, expScores:124,189, srow:3333296
28225 chr5 140809978 140810250 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:7, expNums:108,149,193,231,310,355,466, expScores:382,343,252,228,580,167,1000, srow:3333297
28225 chr5 140810082 140810337 wgEncodeRegTfbsClusteredV3 CEBPB score:228, expCount:1, expNums:462, expScores:228, srow:3333298
28225 chr5 140810400 140810603 wgEncodeRegTfbsClusteredV3 CTCF score:150, expCount:1, expNums:604, expScores:150, srow:3333299
28225 chr5 140810791 140811114 wgEncodeRegTfbsClusteredV3 TAF1 score:115, expCount:1, expNums:132, expScores:115, srow:3333300
28225 chr5 140810805 140811120 wgEncodeRegTfbsClusteredV3 YY1 score:173, expCount:1, expNums:133, expScores:173, srow:3333301
28225 chr5 140810827 140811324 wgEncodeRegTfbsClusteredV3 POLR2A score:350, expCount:5, expNums:130,131,328,336,338, expScores:253,350,339,267,317, srow:3333302
28225 chr5 140811101 140811396 wgEncodeRegTfbsClusteredV3 CTCF score:184, expCount:1, expNums:673, expScores:184, srow:3333303
28225 chr5 140810085 140810091 tfbsConsSites V$EN1_01 score:971, zScore:1.75, srow:4257097
28225 chr5 140810236 140810253 tfbsConsSites V$CMYB_01 score:803, zScore:1.93, srow:4257098
28225 chr5 140810414 140810422 tfbsConsSites V$LMO2COM_02 score:945, zScore:2.61, srow:4257099
28225 chr5 140810439 140810452 tfbsConsSites V$CEBPB_01 score:882, zScore:1.67, srow:4257100
28225 chr5 140810456 140810467 tfbsConsSites V$PAX4_03 score:911, zScore:1.76, srow:4257101
28225 chr5 140810463 140810484 tfbsConsSites V$OLF1_01 score:796, zScore:1.7, srow:4257102
28225 chr5 140810469 140810485 tfbsConsSites V$LUN1_01 score:722, zScore:1.99, srow:4257103
28225 chr5 140810470 140810497 tfbsConsSites V$PAX5_02 score:762, zScore:1.67, srow:4257104
  • Page 1 of 19
  • 25 of 457 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28225 cellmeth_recounts PrEC: 17, LNCaP: 69, DU145: 154
28225 cellmeth_diffreps_PrECvsLNCaP A=2, B=19, Length=260, Event=Up, log2FC=3.25, padj=0.00224130350024156
28225 cellmeth_diffreps_PrECvsDU145 A=11, B=86, Length=920, Event=Up, log2FC=2.97, padj=7.20014279297626e-14
28225 cellmeth_diffreps_LNCaPvsDU145 A=3.21, B=24.32, Length=220, Event=Up, log2FC=2.92, padj=0.00242358004041462
28225 cellexp id=ENSG00000081853, name=PCDHGA2, PrEC=36, str=158, LNCaP=143, str=96, DU145=11, str=3
28225 cellexp id=ENSG00000204956, name=PCDHGA1, PrEC=6, str=21, LNCaP=181, str=97, DU145=21, str=2
28225 cellexp id=ENSG00000253159, name=PCDHGA12, PrEC=131, str=224, LNCaP=95, str=48, DU145=6, str=3
28225 cellexp id=ENSG00000253305, name=PCDHGB6, PrEC=36, str=69, LNCaP=87, str=56, DU145=42, str=22
28225 cellexp id=ENSG00000253485, name=PCDHGA5, PrEC=4, str=41, LNCaP=162, str=109, DU145=34, str=18
28225 cellexp id=ENSG00000253537, name=PCDHGA7, PrEC=13, str=142, LNCaP=203, str=111, DU145=205, str=106
28225 cellexp id=ENSG00000253731, name=PCDHGA6, PrEC=22, str=128, LNCaP=134, str=106, DU145=54, str=37
28225 cellexp id=ENSG00000253767, name=PCDHGA8, PrEC=7, str=34, LNCaP=303, str=488, DU145=12, str=4
28225 cellexp id=ENSG00000253846, name=PCDHGA10, PrEC=98, str=158, LNCaP=430, str=305, DU145=43, str=31
28225 cellexp id=ENSG00000253873, name=PCDHGA11, PrEC=157, str=176, LNCaP=59, str=31, DU145=18, str=7
28225 cellexp id=ENSG00000253910, name=PCDHGB2, PrEC=9, str=57, LNCaP=166, str=133, DU145=359, str=244
28225 cellexp id=ENSG00000253953, name=PCDHGB4, PrEC=76, str=469, LNCaP=105, str=59, DU145=28, str=16
28225 cellexp id=ENSG00000254122, name=PCDHGB7, PrEC=73, str=160, LNCaP=62, str=35, DU145=94, str=45
28225 cellexp id=ENSG00000254221, name=PCDHGB1, PrEC=13, str=60, LNCaP=234, str=371, DU145=8, str=3
28225 cellexp id=ENSG00000254245, name=PCDHGA3, PrEC=0, str=20, LNCaP=87, str=59, DU145=3, str=0
28225 cellexp id=ENSG00000261934, name=PCDHGA9, PrEC=19, str=28, LNCaP=61, str=20, DU145=46, str=28
28225 cellexp id=ENSG00000262209, name=PCDHGB3, PrEC=13, str=128, LNCaP=76, str=60, DU145=63, str=41
28225 cellexp id=ENSG00000262576, name=PCDHGA4, PrEC=16, str=313, LNCaP=92, str=110, DU145=12, str=9
28225 tcgameth site:cg01224715, B=0.47, L=0.74, H=0.73
28225 tcgameth site:cg02267483, B=0.35, L=0.61, H=0.59
28225 tcgameth site:cg02452944, B=0.28, L=0.66, H=0.61
28225 tcgameth site:cg04080041, B=0.31, L=0.58, H=0.54
28225 tcgameth site:cg07539798, B=0.42, L=0.66, H=0.64
28225 tcgameth site:cg07730329, B=0.43, L=0.73, H=0.66
28225 tcgameth site:cg07802710, B=0.25, L=0.54, H=0.49
28225 tcgameth site:cg09639151, B=0.27, L=0.65, H=0.6
28225 tcgameth site:cg11647681, B=0.36, L=0.63, H=0.58
28225 tcgameth site:cg12304520, B=0.37, L=0.74, H=0.65
28225 tcgameth site:cg14253517, B=0.32, L=0.54, H=0.53
28225 tcgameth site:cg21185686, B=0.27, L=0.61, H=0.6
28225 tcgameth site:cg21627409, B=0.2, L=0.59, H=0.53
28225 tcgameth site:cg23082339, B=0.12, L=0.51, H=0.43
28225 tcgameth site:cg23244790, B=0.13, L=0.58, H=0.53
28225 tcgameth site:cg24576050, B=0.32, L=0.53, H=0.49
28225 tcgaexp gene=PCDHGB4, entrez=8641, pos=chr5:140767452-140892548(+), B=192, L=511, M=249, H=215
28225 tcgaexp gene=PCDHGA8, entrez=9708, pos=chr5:140767452-140892548(+), B=35, L=193, M=48, H=49
28225 tcgaexp gene=PCDHGA12, entrez=26025, pos=chr5:140810158-140892548(+), B=144, L=93, M=79, H=99
28225 tcgaexp gene=PCDHGB7, entrez=56099, pos=chr5:140797214-140892548(+), B=647, L=445, M=489, H=421
28225 tcgaexp gene=PCDHGB6, entrez=56100, pos=chr5:140787770-140892548(+), B=275, L=222, M=268, H=231
28225 tcgaexp gene=PCDHGB5, entrez=56101, pos=chr5:140777695-140892548(+), B=534, L=942, M=758, H=789
28225 tcgaexp gene=PCDHGB3, entrez=56102, pos=chr5:140749962-140892548(+), B=43, L=92, M=60, H=110
28225 tcgaexp gene=PCDHGB2, entrez=56103, pos=chr5:140739703-140892548(+), B=208, L=477, M=456, H=948
28225 tcgaexp gene=PCDHGB1, entrez=56104, pos=chr5:140729828-140892548(+), B=119, L=500, M=401, H=479
28225 tcgaexp gene=PCDHGA11, entrez=56105, pos=chr5:140800537-140892548(+), B=92, L=85, M=109, H=97
28225 tcgaexp gene=PCDHGA10, entrez=56106, pos=chr5:140792743-140892548(+), B=357, L=586, M=404, H=516
28225 tcgaexp gene=PCDHGA9, entrez=56107, pos=chr5:140782520-140892548(+), B=240, L=145, M=152, H=117
28225 tcgaexp gene=PCDHGA7, entrez=56108, pos=chr5:140762467-140892548(+), B=163, L=424, M=275, H=247
28225 tcgaexp gene=PCDHGA6, entrez=56109, pos=chr5:140753651-140892548(+), B=169, L=192, M=147, H=217
28225 tcgaexp gene=PCDHGA5, entrez=56110, pos=chr5:140743898-140892548(+), B=201, L=783, M=537, H=1529
28225 tcgaexp gene=PCDHGA4, entrez=56111, pos=chr5:140734768-140892548(+), B=157, L=356, M=224, H=321
28225 tcgaexp gene=PCDHGA3, entrez=56112, pos=chr5:140723601-140892548(+), B=92, L=232, M=124, H=192
28225 tcgaexp gene=PCDHGA2, entrez=56113, pos=chr5:140718354-140892548(+), B=236, L=401, M=276, H=511
28225 tcgaexp gene=PCDHGA1, entrez=56114, pos=chr5:140710252-140892548(+), B=38, L=108, M=76, H=136