DMR 28253 chr5:145718351-145719950 (1600bp)

DMR Stats
Positionchr5:145718351-145719950 (View on UCSC)
Width1600bp
Genomic Contextpromoter
Nearest GenesPOU4F3 (0bp away)
ANODEV p-value1.12711317095e-05
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 4.0 (44.44 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28253 POU4F3 23260 uc003loa.2 chr5 145718587 145720083 + 1364 85.25 0.1 0 46.0 E1 (13.06), I1 (19.75), E2 (52.5) 54.19
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28253 chr5 145718326 145719735 wgEncodeRegDnaseClusteredV2 50 score:874, srow:977269
28253 chr5 145719846 145720595 wgEncodeRegDnaseClusteredV2 105 score:1000, srow:977270
28253 chr5 145716383 145720949 wgEncodeRegTfbsClusteredV3 EZH2 score:790, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:350,255,179,112,527,225,288,208,298, srow:3343661
28253 chr5 145717920 145718965 wgEncodeRegTfbsClusteredV3 SUZ12 score:297, expCount:2, expNums:358,578, expScores:143,175, srow:3343664
28253 chr5 145718205 145718804 wgEncodeRegTfbsClusteredV3 CTBP2 score:180, expCount:1, expNums:348, expScores:180, srow:3343665
28253 chr5 145718371 145718694 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:139, expCount:1, expNums:151, expScores:139, srow:3343666
28253 chr5 145718492 145718735 wgEncodeRegTfbsClusteredV3 REST score:141, expCount:1, expNums:144, expScores:141, srow:3343667
28253 chr5 145718544 145718893 wgEncodeRegTfbsClusteredV3 HDAC2 score:140, expCount:1, expNums:27, expScores:140, srow:3343668
28253 chr5 145719170 145719479 wgEncodeRegTfbsClusteredV3 SUZ12 score:331, expCount:1, expNums:358, expScores:331, srow:3343669
28253 chr5 145719327 145719650 wgEncodeRegTfbsClusteredV3 REST score:169, expCount:1, expNums:248, expScores:169, srow:3343670
28253 chr5 145719841 145720168 wgEncodeRegTfbsClusteredV3 SUZ12 score:267, expCount:2, expNums:358,578, expScores:216,267, srow:3343671
28253 chr5 145719878 145720477 wgEncodeRegTfbsClusteredV3 CTBP2 score:169, expCount:1, expNums:348, expScores:169, srow:3343672
28253 chr5 145718349 145718368 tfbsConsSites V$P53_01 score:723, zScore:2.54, srow:4270944
28253 chr5 145718354 145718371 tfbsConsSites V$AHR_01 score:769, zScore:1.74, srow:4270945
28253 chr5 145718371 145718385 tfbsConsSites V$TATA_01 score:910, zScore:2.57, srow:4270946
28253 chr5 145718415 145718433 tfbsConsSites V$SEF1_C score:799, zScore:3.23, srow:4270947
28253 chr5 145718446 145718467 tfbsConsSites V$HEN1_01 score:794, zScore:1.99, srow:4270948
28253 chr5 145718448 145718457 tfbsConsSites V$NFKAPPAB50_01 score:861, zScore:1.73, srow:4270949
28253 chr5 145718451 145718462 tfbsConsSites V$EGR1_01 score:841, zScore:1.88, srow:4270950
28253 chr5 145718451 145718462 tfbsConsSites V$NGFIC_01 score:834, zScore:1.75, srow:4270951
28253 chr5 145718458 145718479 tfbsConsSites V$OLF1_01 score:818, zScore:2.07, srow:4270952
28253 chr5 145718466 145718481 tfbsConsSites V$ARNT_01 score:844, zScore:1.83, srow:4270953
28253 chr5 145718486 145718505 tfbsConsSites V$P53_01 score:742, zScore:2.87, srow:4270954
28253 chr5 145718496 145718511 tfbsConsSites V$ELK1_01 score:840, zScore:1.71, srow:4270955
28253 chr5 145718523 145718544 tfbsConsSites V$TCF11MAFG_01 score:757, zScore:1.96, srow:4270956
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  • 25 of 209 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28253 cellmeth_recounts PrEC: 8, LNCaP: 28, DU145: 94
28253 cellmeth_diffreps_PrECvsDU145 A=0, B=17, Length=260, Event=Up, log2FC=Inf, padj=7.41301388411866e-05
28253 cellmeth_diffreps_PrECvsDU145 A=0, B=13, Length=240, Event=Up, log2FC=Inf, padj=0.000941091010072773
28253 cellmeth_diffreps_LNCaPvsDU145 A=1.07, B=16.84, Length=240, Event=Up, log2FC=3.98, padj=0.0045445753436328
28253 cellexp id=ENSG00000091009, name=RBM27, PrEC=5027, str=3563, LNCaP=1954, str=2606, DU145=5499, str=5303
28253 cellexp id=ENSG00000091010, name=POU4F3, PrEC=0, str=2, LNCaP=1, str=0, DU145=3, str=4
28253 cellexp id=ENSG00000250025, name=CTC-359M8.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
28253 tcgameth site:cg01593834, B=0.09, L=0.33, H=0.29
28253 tcgameth site:cg01819137, B=0.13, L=0.21, H=0.23
28253 tcgameth site:cg04701505, B=0.22, L=0.34, H=0.42
28253 tcgameth site:cg05666607, B=0.05, L=0.24, H=0.22
28253 tcgameth site:cg17871749, B=0.14, L=0.21, H=0.23
28253 tcgameth site:cg18369866, B=0.12, L=0.29, H=0.27
28253 tcgameth site:cg18482268, B=0.13, L=0.28, H=0.26
28253 tcgameth site:cg19974854, B=0.1, L=0.17, H=0.19
28253 tcgameth site:cg23303408, B=0.16, L=0.28, H=0.28
28253 tcgaexp gene=POU4F3, entrez=5459, pos=chr5:145718587-145720083(+), B=2, L=2, M=2, H=2