DMR 28342 chr5:172659001-172659750 (750bp)

DMR Stats
Positionchr5:172659001-172659750 (View on UCSC)
Width750bp
Genomic Context3' end
Nearest GenesNKX2-5 (0bp away)
ANODEV p-value2.08658349858e-10
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28342 NKX2-5 23471 uc003mcm.2 chr5 172659107 172662315 - 644 85.87 0.73 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc010jjt.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc011dfe.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28342 chr5 172658386 172659210 wgEncodeRegDnaseClusteredV2 23 score:570, srow:989600
28342 chr5 172659506 172660495 wgEncodeRegDnaseClusteredV2 41 score:619, srow:989601
28342 chr5 172658265 172662418 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:3,6,15,17,21,36,38,40,43, expScores:157,619,526,169,339,264,436,218,454, srow:3383214
28342 chr5 172659119 172659264 wgEncodeRegTfbsClusteredV3 EGR1 score:466, expCount:1, expNums:216, expScores:466, srow:3383216
28342 chr5 172659622 172661000 wgEncodeRegTfbsClusteredV3 SUZ12 score:317, expCount:2, expNums:358,578, expScores:171,139, srow:3383217
28342 chr5 172659123 172659135 tfbsConsSites V$NKX61_01 score:841, zScore:1.92, srow:4346037
28342 chr5 172659166 172659181 tfbsConsSites V$FREAC7_01 score:922, zScore:2.9, srow:4346038
28342 chr5 172659169 172659183 tfbsConsSites V$TATA_01 score:885, zScore:2.07, srow:4346039
28342 chr5 172659169 172659183 tfbsConsSites V$CDPCR3_01 score:806, zScore:2.08, srow:4346040
28342 chr5 172659594 172659621 tfbsConsSites V$PAX5_02 score:779, zScore:1.96, srow:4346041
28342 chr5 172659653 172659673 tfbsConsSites V$PPARG_01 score:742, zScore:1.96, srow:4346042
28342 chr5 172659656 172659669 tfbsConsSites V$COUP_01 score:850, zScore:1.79, srow:4346043
28342 chr5 172659670 172659687 tfbsConsSites V$CMYB_01 score:804, zScore:1.95, srow:4346044
28342 chr5 172659683 172659700 tfbsConsSites V$CMYB_01 score:795, zScore:1.78, srow:4346045
28342 chr5 172659684 172659711 tfbsConsSites V$PAX5_01 score:771, zScore:1.82, srow:4346046
28342 chr5 172659733 172659748 tfbsConsSites V$E47_02 score:886, zScore:1.87, srow:4346047
28342 chr5 172659592 172659592 cosmic COSM396585 srow:992684
28342 chr5 172659615 172659615 cosmic COSM322039 srow:992685
28342 chr5 172659641 172659641 cosmic COSM367714 srow:992686
28342 chr5 172659642 172659642 cosmic COSM1217396 srow:992687
28342 chr5 172659648 172659648 cosmic COSM1065900 srow:992688
28342 chr5 172659655 172659655 cosmic COSM591406 srow:992689
28342 chr5 172659658 172659658 cosmic COSM1259157 srow:992690
28342 chr5 172659659 172659659 cosmic COSM1259156 srow:992691
28342 chr5 172659666 172659666 cosmic COSM1696764 srow:992692
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  • 25 of 56 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28342 cellmeth_recounts PrEC: 11, LNCaP: 210, DU145: 44
28342 cellmeth_diffreps_PrECvsLNCaP A=9, B=343, Length=1160, Event=Up, log2FC=5.25, padj=0
28342 cellmeth_diffreps_PrECvsDU145 A=0, B=20, Length=360, Event=Up, log2FC=Inf, padj=1.02756470669418e-05
28342 cellmeth_diffreps_LNCaPvsDU145 A=393.41, B=42.09, Length=1400, Event=Down, log2FC=-3.22, padj=0
28342 cellexp id=ENSG00000183072, name=NKX2-5, PrEC=0, str=0, LNCaP=1, str=0, DU145=41, str=76
28342 tcgameth site:cg07798980, B=0.48, L=0.62, H=0.6
28342 tcgameth site:cg19923650, B=0.08, L=0.31, H=0.42
28342 tcgaexp gene=NKX2-5, entrez=1482, pos=chr5:172659107-172662315(-), B=1, L=0, M=5, H=27