DMR 28364 chr5:175085351-175085850 (500bp)

DMR Stats
Positionchr5:175085351-175085850 (View on UCSC)
Width500bp
Genomic Contextpromoter
Nearest GenesHRH2 (0bp away)
ANODEV p-value1.72874552387e-08
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28364 HRH2 23485 uc003mdc.4 chr5 175085040 175113245 + 500 100.0 0.16 0 37.8 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28364 chr5 175085266 175086195 wgEncodeRegDnaseClusteredV2 37 score:703, srow:991193
28364 chr5 175084502 175085558 wgEncodeRegTfbsClusteredV3 E2F1 score:1000, expCount:1, expNums:572, expScores:306, srow:3388115
28364 chr5 175084663 175085686 wgEncodeRegTfbsClusteredV3 RBBP5 score:403, expCount:1, expNums:8, expScores:300, srow:3388119
28364 chr5 175084688 175086004 wgEncodeRegTfbsClusteredV3 EZH2 score:539, expCount:5, expNums:1,19,36,38,40, expScores:256,98,268,194,236, srow:3388122
28364 chr5 175085351 175085950 wgEncodeRegTfbsClusteredV3 CTBP2 score:151, expCount:1, expNums:348, expScores:151, srow:3388126
28364 chr5 175085780 175086103 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:117, expCount:1, expNums:151, expScores:117, srow:3388127
28364 chr5 175085824 175086067 wgEncodeRegTfbsClusteredV3 RAD21 score:814, expCount:2, expNums:149,355, expScores:814,257, srow:3388128
28364 chr5 175085831 175086143 wgEncodeRegTfbsClusteredV3 CTCF score:274, expCount:7, expNums:0,5,137,598,609,628,688, expScores:161,212,200,274,225,163,147, srow:3388129
28364 chr5 175085372 175085375 phastConsElements100way lod=13 score:247, srow:7465135
28364 chr5 175085505 175085513 phastConsElements100way lod=18 score:280, srow:7465136
28364 chr5 175085849 175085858 phastConsElements100way lod=50 score:381, srow:7465137
28364 chr5 175085005 175085756 cpgIsland CpG: 73 length:752, cpgNum:73, gcNum:437, perCpg:19.4, perGc:58.1, obsExp:1.16, srow:21420
28364 chr5 175085757 175087756 cpgShore — values(x.gr)[overs$srow, ]:38726
  • 13 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28364 cellmeth_recounts PrEC: 7, LNCaP: 44, DU145: 23
28364 cellmeth_diffreps_PrECvsLNCaP A=1, B=22, Length=380, Event=Up, log2FC=4.46, padj=5.80135062334059e-05
28364 cellexp id=ENSG00000113749, name=HRH2, PrEC=0, str=0, LNCaP=2, str=2, DU145=2, str=2
28364 tcgameth site:cg05157516, B=0.28, L=0.46, H=0.46
28364 tcgaexp gene=HRH2, entrez=3274, pos=chr5:175085040-175113245(+), B=122, L=62, M=55, H=48