DMR 284 chr1:55248601-55248750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:55248601-55248750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | TTC22 (0bp away) |
| ANODEV p-value | 0.000918999631637 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 284 | TTC22 | 924 | uc009vzt.1 | chr1 | 55246752 | 55266941 | - | 150 | 100.0 | 0.22 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 284 | chr1 | 55248586 | 55248755 | wgEncodeRegDnaseClusteredV2 | 2 | score:139, srow:41712 |
| 284 | chr1 | 55247520 | 55249519 | cpgShore | — | values(x.gr)[overs$srow, ]:2113 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 284 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 0 |  |
| 284 | cellexp | id=ENSG00000006555, name=TTC22, PrEC=998, str=553, LNCaP=8, str=0, DU145=535, str=337 |  |
| 284 | tcgaexp | gene=TTC22, entrez=55001, pos=chr1:55246752-55266941(-), B=297, L=172, M=195, H=147 |  |
| 284 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |