DMR 28443 chr6:683851-684050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr6:683851-684050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | EXOC2 (0bp away) |
| ANODEV p-value | 2.06348622942e-05 |
| Frequencies | Benign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28443 | EXOC2 | 23632 | uc003mtd.4 | chr6 | 485138 | 693141 | - | 200 | 100.0 | 1.98 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0) | 0.0 |
| 28443 | EXOC2 | 23632 | uc003mte.4 | chr6 | 485138 | 693141 | - | 200 | 100.0 | 0.33 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0) | 0.0 |
| 28443 | EXOC2 | 23632 | uc011dho.3 | chr6 | 485138 | 693141 | - | 200 | 100.0 | 0.33 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 28443 | chr6 | 683781 | 684435 | wgEncodeRegDnaseClusteredV2 | 87 | score:1000, srow:996104 |
| 28443 | chr6 | 683718 | 684594 | wgEncodeRegTfbsClusteredV3 | KAP1 | score:943, expCount:2, expNums:365,588, expScores:349,407, srow:3404043 |
| 28443 | chr6 | 683743 | 684412 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:209, expCount:1, expNums:8, expScores:209, srow:3404044 |
| 28443 | chr6 | 683747 | 684326 | wgEncodeRegTfbsClusteredV3 | ATF2 | score:277, expCount:1, expNums:134, expScores:277, srow:3404045 |
| 28443 | chr6 | 683749 | 684408 | wgEncodeRegTfbsClusteredV3 | MTA3 | score:321, expCount:1, expNums:95, expScores:321, srow:3404046 |
| 28443 | chr6 | 683801 | 684400 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:221, expCount:1, expNums:348, expScores:221, srow:3404047 |
| 28443 | chr6 | 683878 | 684397 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:524, expCount:1, expNums:357, expScores:524, srow:3404048 |
| 28443 | chr6 | 683889 | 684378 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:252, expCount:1, expNums:157, expScores:252, srow:3404049 |
| 28443 | chr6 | 683962 | 684437 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:246, expCount:2, expNums:146,610, expScores:246,135, srow:3404050 |
| 28443 | chr6 | 683962 | 684265 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:355, expCount:1, expNums:251, expScores:355, srow:3404051 |
| 28443 | chr6 | 683974 | 684297 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:243, expCount:1, expNums:151, expScores:243, srow:3404052 |
| 28443 | chr6 | 683974 | 684325 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:1000, expCount:1, expNums:109, expScores:1000, srow:3404053 |
| 28443 | chr6 | 683979 | 684308 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:279, expCount:1, expNums:345, expScores:279, srow:3404054 |
| 28443 | chr6 | 683982 | 684403 | wgEncodeRegTfbsClusteredV3 | EP300 | score:288, expCount:3, expNums:99,145,519, expScores:163,288,187, srow:3404055 |
| 28443 | chr6 | 683993 | 684336 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:165, expCount:1, expNums:353, expScores:165, srow:3404056 |
| 28443 | chr6 | 683997 | 684286 | wgEncodeRegTfbsClusteredV3 | MAFK | score:129, expCount:1, expNums:351, expScores:129, srow:3404057 |
| 28443 | chr6 | 684009 | 684343 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:895, expCount:1, expNums:368, expScores:895, srow:3404058 |
| 28443 | chr6 | 684018 | 684261 | wgEncodeRegTfbsClusteredV3 | JUND | score:192, expCount:1, expNums:142, expScores:192, srow:3404059 |
| 28443 | chr6 | 684023 | 684346 | wgEncodeRegTfbsClusteredV3 | SP1 | score:280, expCount:1, expNums:153, expScores:280, srow:3404060 |
| 28443 | chr6 | 684026 | 684541 | wgEncodeRegTfbsClusteredV3 | TCF7L2 | score:242, expCount:1, expNums:367, expScores:242, srow:3404061 |
| 28443 | chr6 | 683863 | 683877 | tfbsConsSites | V$TST1_01 | score:832, zScore:1.64, srow:4361417 |
| 28443 | chr6 | 683988 | 684001 | tfbsConsSites | V$MRF2_01 | score:841, zScore:1.96, srow:4361418 |
| 28443 | chr6 | 684014 | 684031 | tfbsConsSites | V$FOXJ2_01 | score:910, zScore:2.19, srow:4361419 |
| 28443 | chr6 | 684015 | 684030 | tfbsConsSites | V$FREAC2_01 | score:842, zScore:2.25, srow:4361420 |
| 28443 | chr6 | 684015 | 684030 | tfbsConsSites | V$FREAC4_01 | score:860, zScore:2.85, srow:4361421 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 28443 | cellmeth_recounts | PrEC: 8, LNCaP: 8, DU145: 0 |  |
| 28443 | cellmeth_diffreps_PrECvsDU145 | A=13, B=0, Length=260, Event=Down, log2FC=-Inf, padj=0.000941091010072773 |  |
| 28443 | cellexp | id=ENSG00000112685, name=EXOC2, PrEC=3596, str=4505, LNCaP=1056, str=978, DU145=3583, str=3650 |  |
| 28443 | tcgaexp | gene=GPX5, entrez=2880, pos=chr6:15993-28502728(+), B=17, L=14, M=13, H=29 |  |
| 28443 | tcgaexp | gene=TRIM27, entrez=5987, pos=chr6:174180-28891768(-), B=3498, L=4532, M=4615, H=4568 |  |
| 28443 | tcgaexp | gene=OR12D2, entrez=26529, pos=chr6:667404-29365448(+), B=0, L=0, M=0, H=0 |  |
| 28443 | tcgaexp | gene=OR2W1, entrez=26692, pos=chr6:315387-29012952(-), B=0, L=0, M=0, H=0 |  |
| 28443 | tcgaexp | gene=OR2J2, entrez=26707, pos=chr6:444717-29142351(+), B=0, L=0, M=0, H=0 |  |
| 28443 | tcgaexp | gene=EXOC2, entrez=55770, pos=chr6:485138-693141(-), B=1620, L=1627, M=1584, H=1634 |  |
| 28443 | tcgaexp | gene=OR5V1, entrez=81696, pos=chr6:626454-29324054(-), B=0, L=0, M=0, H=0 |  |
| 28443 | tcgaexp | gene=OR12D3, entrez=81797, pos=chr6:644333-29343068(-), B=0, L=0, M=0, H=0 |  |
| 28443 | tcgaexp | gene=SCAND3, entrez=114821, pos=chr6:61611-28555112(-), B=519, L=631, M=811, H=931 |  |
| 28443 | tcgaexp | gene=ZNF311, entrez=282890, pos=chr6:265991-28973093(-), B=189, L=178, M=186, H=171 |  |
| 28443 | tcgaexp | gene=OR2B3, entrez=442184, pos=chr6:357384-29055090(-), B=0, L=0, M=0, H=0 |  |
| 28443 | tcgaexp | gene=OR2J3, entrez=442186, pos=chr6:383070-29080603(+), B=0, L=0, M=1, H=1 |  |
| 28443 | tcgaexp | gene=OR14J1, entrez=442191, pos=chr6:577912-29275432(+), B=0, L=0, M=0, H=0 |  |