DMR 28459 chr6:1624501-1625750 (1250bp)

DMR Stats
Positionchr6:1624501-1625750 (View on UCSC)
Width1250bp
Genomic Context3' end
Nearest GenesGMDS (0bp away)
ANODEV p-value2.6025658583e-09
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28459 GMDS 23643 uc003mtq.3 chr6 1624035 2245868 - 1250 100.0 0.48 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (78.08), E10 (5.52), I10 (16.48), E11 (0) 42.72
28459 GMDS 23643 uc021ykn.1 chr6 1624035 2176225 - 1250 100.0 0.48 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (78.08), E10 (5.52), I10 (16.48), E11 (0) 42.72
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28459 chr6 1624266 1625310 wgEncodeRegDnaseClusteredV2 95 score:1000, srow:996829
28459 chr6 1625326 1625910 wgEncodeRegDnaseClusteredV2 41 score:584, srow:996830
28459 chr6 1623854 1626119 wgEncodeRegTfbsClusteredV3 EZH2 score:535, expCount:2, expNums:6,36, expScores:311,226, srow:3406214
28459 chr6 1624220 1624639 wgEncodeRegTfbsClusteredV3 POLR2A score:151, expCount:1, expNums:366, expScores:151, srow:3406216
28459 chr6 1624227 1624536 wgEncodeRegTfbsClusteredV3 SUZ12 score:218, expCount:1, expNums:358, expScores:218, srow:3406217
28459 chr6 1624419 1625018 wgEncodeRegTfbsClusteredV3 CTBP2 score:148, expCount:1, expNums:348, expScores:148, srow:3406218
28459 chr6 1624516 1624859 wgEncodeRegTfbsClusteredV3 YY1 score:162, expCount:1, expNums:119, expScores:162, srow:3406219
28459 chr6 1624549 1624812 wgEncodeRegTfbsClusteredV3 EBF1 score:174, expCount:1, expNums:86, expScores:174, srow:3406220
28459 chr6 1624589 1624824 wgEncodeRegTfbsClusteredV3 BATF score:365, expCount:1, expNums:81, expScores:365, srow:3406221
28459 chr6 1624887 1625050 wgEncodeRegTfbsClusteredV3 RUNX3 score:397, expCount:1, expNums:109, expScores:397, srow:3406222
28459 chr6 1624943 1625752 wgEncodeRegTfbsClusteredV3 SUZ12 score:170, expCount:2, expNums:358,578, expScores:108,170, srow:3406223
28459 chr6 1625029 1625268 wgEncodeRegTfbsClusteredV3 SPI1 score:169, expCount:1, expNums:126, expScores:169, srow:3406224
28459 chr6 1625042 1625505 wgEncodeRegTfbsClusteredV3 POLR2A score:148, expCount:2, expNums:206,619, expScores:148,123, srow:3406225
28459 chr6 1624708 1624725 tfbsConsSites V$AHR_01 score:773, zScore:1.81, srow:4363673
28459 chr6 1624720 1624729 tfbsConsSites V$CREL_01 score:926, zScore:2.25, srow:4363674
28459 chr6 1624710 1624710 cosmic COSM1131981 srow:998337
28459 chr6 1624763 1624763 cosmic COSM1696862 srow:998338
28459 chr6 1624701 1624712 phastConsElements100way lod=109 score:458, srow:7489475
28459 chr6 1624714 1624742 phastConsElements100way lod=214 score:525, srow:7489476
28459 chr6 1624747 1624777 phastConsElements100way lod=264 score:545, srow:7489477
28459 chr6 1625103 1625130 phastConsElements100way lod=78 score:425, srow:7489478
28459 chr6 1624186 1625468 cpgIsland CpG: 111 length:1283, cpgNum:111, gcNum:840, perCpg:17.3, perGc:65.5, obsExp:0.81, srow:21623
28459 chr6 1625469 1627468 cpgShore — values(x.gr)[overs$srow, ]:39089
  • 23 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28459 cellmeth_recounts PrEC: 40, LNCaP: 736, DU145: 14
28459 cellmeth_diffreps_PrECvsLNCaP A=107, B=642, Length=1480, Event=Up, log2FC=2.58, padj=0
28459 cellmeth_diffreps_PrECvsDU145 A=369, B=30, Length=760, Event=Down, log2FC=-3.62, padj=0
28459 cellmeth_diffreps_LNCaPvsDU145 A=947.17, B=30.87, Length=1840, Event=Down, log2FC=-4.94, padj=0
28459 cellexp id=ENSG00000112699, name=GMDS, PrEC=1872, str=565, LNCaP=2030, str=1929, DU145=1037, str=916
28459 tcgameth site:cg06960457, B=0.11, L=0.46, H=0.38
28459 tcgameth site:cg08513472, B=0.15, L=0.56, H=0.51
28459 tcgameth site:cg20384898, B=0.12, L=0.57, H=0.52
28459 tcgameth site:cg21347053, B=0.23, L=0.59, H=0.54
28459 tcgameth site:cg27478313, B=0.38, L=0.67, H=0.66
28459 tcgaexp gene=GABBR1, entrez=2550, pos=chr6:826391-29600962(-), B=1121, L=1014, M=960, H=1101
28459 tcgaexp gene=GMDS, entrez=2762, pos=chr6:1624035-2245868(-), B=1064, L=3195, M=2585, H=1636
28459 tcgaexp gene=GPX5, entrez=2880, pos=chr6:15993-28502728(+), B=17, L=14, M=13, H=29
28459 tcgaexp gene=HLA-A, entrez=3105, pos=chr6:1150036-29913661(+), B=36590, L=48530, M=36731, H=28885
28459 tcgaexp gene=HLA-F, entrez=3134, pos=chr6:991622-29706966(+), B=2279, L=2960, M=2415, H=2101
28459 tcgaexp gene=HLA-G, entrez=3135, pos=chr6:1095035-29977733(+), B=185, L=193, M=204, H=216
28459 tcgaexp gene=HLA-H, entrez=3136, pos=chr6:1096103-29976954(+), B=3120, L=4199, M=3472, H=2680
28459 tcgaexp gene=HLA-J, entrez=3137, pos=chr6:1213596-29977733(+), B=43, L=29, M=32, H=23
28459 tcgaexp gene=HLA-L, entrez=3139, pos=chr6:1520255-30234728(+), B=65, L=64, M=68, H=63
28459 tcgaexp gene=MOG, entrez=4340, pos=chr6:927718-29640149(+), B=2, L=1, M=1, H=1
28459 tcgaexp gene=TRIM27, entrez=5987, pos=chr6:174180-28891768(-), B=3498, L=4532, M=4615, H=4568
28459 tcgaexp gene=PPP1R11, entrez=6992, pos=chr6:1275163-30038108(+), B=4798, L=4525, M=4576, H=4488
28459 tcgaexp gene=TRIM26, entrez=7726, pos=chr6:1392422-30181271(-), B=4299, L=4688, M=4414, H=4324
28459 tcgaexp gene=OR2H2, entrez=7932, pos=chr6:858710-29556745(+), B=1, L=1, M=1, H=1
28459 tcgaexp gene=TRIM10, entrez=10107, pos=chr6:1359959-30128711(-), B=1, L=1, M=1, H=1
28459 tcgaexp gene=HCG9, entrez=10255, pos=chr6:1235684-29946177(+), B=1, L=0, M=1, H=1
28459 tcgaexp gene=UBD, entrez=10537, pos=chr6:826391-29527702(-), B=1189, L=2016, M=1907, H=1455
28459 tcgaexp gene=TRIM31, entrez=11074, pos=chr6:1318454-30080867(-), B=192, L=19, M=64, H=13
28459 tcgaexp gene=OR12D2, entrez=26529, pos=chr6:667404-29365448(+), B=0, L=0, M=0, H=0
28459 tcgaexp gene=OR11A1, entrez=26531, pos=chr6:696260-29395509(-), B=0, L=0, M=0, H=0
28459 tcgaexp gene=OR2W1, entrez=26692, pos=chr6:315387-29012952(-), B=0, L=0, M=0, H=0
28459 tcgaexp gene=OR2J2, entrez=26707, pos=chr6:444717-29142351(+), B=0, L=0, M=0, H=0
28459 tcgaexp gene=OR2H1, entrez=26716, pos=chr6:729197-29432099(+), B=0, L=1, M=1, H=1
28459 tcgaexp gene=ZNRD1, entrez=30834, pos=chr6:1269273-30032686(+), B=806, L=855, M=848, H=776
28459 tcgaexp gene=HCG4, entrez=54435, pos=chr6:1059227-29760850(-), B=157, L=94, M=85, H=56
28459 tcgaexp gene=TRIM39, entrez=56658, pos=chr6:1587150-30311506(+), B=1146, L=1029, M=1058, H=1050
28459 tcgaexp gene=RPP21, entrez=79897, pos=chr6:1605807-30314635(+), B=996, L=1106, M=1089, H=1008
28459 tcgaexp gene=RNF39, entrez=80352, pos=chr6:1278274-30043628(-), B=501, L=425, M=380, H=241
28459 tcgaexp gene=ZNRD1-AS1, entrez=80862, pos=chr6:1208639-30029417(-), B=64, L=72, M=79, H=75
28459 tcgaexp gene=HCG4B, entrez=80868, pos=chr6:1134224-29893428(-), B=23, L=27, M=25, H=20
28459 tcgaexp gene=OR5V1, entrez=81696, pos=chr6:626454-29324054(-), B=0, L=0, M=0, H=0
28459 tcgaexp gene=OR12D3, entrez=81797, pos=chr6:644333-29343068(-), B=0, L=0, M=0, H=0
28459 tcgaexp gene=TRIM15, entrez=89870, pos=chr6:1371202-30140473(+), B=0, L=0, M=0, H=0
28459 tcgaexp gene=SCAND3, entrez=114821, pos=chr6:61611-28555112(-), B=519, L=631, M=811, H=931
28459 tcgaexp gene=MAS1L, entrez=116511, pos=chr6:757511-29455679(-), B=2, L=1, M=1, H=1
28459 tcgaexp gene=TRIM40, entrez=135644, pos=chr6:1344140-30116512(+), B=0, L=0, M=0, H=0
28459 tcgaexp gene=ZNF311, entrez=282890, pos=chr6:265991-28973093(-), B=189, L=178, M=186, H=171
28459 tcgaexp gene=HLA-F-AS1, entrez=285830, pos=chr6:994885-29716826(-), B=155, L=105, M=86, H=59
28459 tcgaexp gene=IFITM4P, entrez=340198, pos=chr6:1019089-29718925(-), B=0, L=0, M=0, H=0
28459 tcgaexp gene=ZFP57, entrez=346171, pos=chr6:943126-29644931(-), B=47, L=24, M=20, H=12
28459 tcgaexp gene=HCG18, entrez=414777, pos=chr6:1548086-30294933(-), B=1177, L=1177, M=1233, H=1257
28459 tcgaexp gene=OR2B3, entrez=442184, pos=chr6:357384-29055090(-), B=0, L=0, M=0, H=0
28459 tcgaexp gene=OR2J3, entrez=442186, pos=chr6:383070-29080603(+), B=0, L=0, M=1, H=1
28459 tcgaexp gene=OR14J1, entrez=442191, pos=chr6:577912-29275432(+), B=0, L=0, M=0, H=0
28459 tcgaexp gene=OR10C1, entrez=442194, pos=chr6:710694-29408754(+), B=0, L=0, M=0, H=0
28459 tcgaexp gene=SNORD32B, entrez=692092, pos=chr6:853056-29550105(+), B=0, L=0, M=0, H=0