DMR 28800 chr6:100895701-100896000 (300bp)

DMR Stats
Positionchr6:100895701-100896000 (View on UCSC)
Width300bp
Genomic Contextintron
Nearest GenesSIM1 (0bp away)
ANODEV p-value0.0392634262541
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28800 SIM1 24889 uc003pqj.4 chr6 100836750 100911811 - 300 100.0 0.16 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
28800 SIM1 24889 uc010kcu.3 chr6 100836750 100912805 - 300 100.0 0.28 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
28800 SIM1 24889 uc021zdg.1 chr6 100836750 100911811 - 300 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28800 chr6 100894081 100895730 wgEncodeRegDnaseClusteredV2 56 score:389, srow:1037718
28800 chr6 100895901 100896755 wgEncodeRegDnaseClusteredV2 23 score:294, srow:1037719
28800 chr6 100894065 100897804 wgEncodeRegTfbsClusteredV3 EZH2 score:724, expCount:6, expNums:3,6,15,36,40,43, expScores:164,314,288,282,412,274, srow:3585015
28800 chr6 100895752 100896271 wgEncodeRegTfbsClusteredV3 SIN3A score:246, expCount:1, expNums:357, expScores:246, srow:3585021
28800 chr6 100895753 100896422 wgEncodeRegTfbsClusteredV3 RBBP5 score:193, expCount:1, expNums:8, expScores:193, srow:3585022
28800 chr6 100895902 100896231 wgEncodeRegTfbsClusteredV3 MAX score:183, expCount:1, expNums:352, expScores:183, srow:3585023
28800 chr6 100895903 100896132 wgEncodeRegTfbsClusteredV3 SRF score:139, expCount:1, expNums:156, expScores:139, srow:3585024
28800 chr6 100895935 100896244 wgEncodeRegTfbsClusteredV3 SUZ12 score:161, expCount:1, expNums:358, expScores:161, srow:3585025
28800 chr6 100895774 100896062 cpgIsland CpG: 23 length:289, cpgNum:23, gcNum:184, perCpg:15.9, perGc:63.7, obsExp:0.79, srow:22392
28800 chr6 100895247 100895773 cpgShore — values(x.gr)[overs$srow, ]:40500
  • 10 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28800 cellmeth_recounts PrEC: 2, LNCaP: 18, DU145: 6
28800 cellexp id=ENSG00000112246, name=SIM1, PrEC=0, str=0, LNCaP=4, str=11, DU145=0, str=0
28800 tcgameth site:cg20234976, B=0.16, L=0.22, H=0.27
28800 tcgaexp gene=SIM1, entrez=6492, pos=chr6:100836750-100912805(-), B=58, L=1, M=0, H=4