DMR 28877 chr6:137808951-137810650 (1700bp)

DMR Stats
Positionchr6:137808951-137810650 (View on UCSC)
Width1700bp
Genomic Contextintergenic
Nearest GenesOLIG3 (2685bp away)
ANODEV p-value0.000888300539174
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28877 chr6 137808166 137808955 wgEncodeRegDnaseClusteredV2 27 score:437, srow:1050982
28877 chr6 137809006 137809995 wgEncodeRegDnaseClusteredV2 35 score:385, srow:1050983
28877 chr6 137810026 137811195 wgEncodeRegDnaseClusteredV2 33 score:837, srow:1050984
28877 chr6 137808652 137811255 wgEncodeRegTfbsClusteredV3 EZH2 score:584, expCount:7, expNums:6,15,17,19,21,36,43, expScores:445,286,167,98,315,414,276, srow:3634081
28877 chr6 137809974 137810493 wgEncodeRegTfbsClusteredV3 SIN3A score:177, expCount:1, expNums:357, expScores:177, srow:3634082
28877 chr6 137810020 137810658 wgEncodeRegTfbsClusteredV3 CHD1 score:393, expCount:2, expNums:4,344, expScores:393,166, srow:3634083
28877 chr6 137810139 137810414 wgEncodeRegTfbsClusteredV3 EGR1 score:307, expCount:1, expNums:138, expScores:307, srow:3634084
28877 chr6 137810238 137810411 wgEncodeRegTfbsClusteredV3 CTBP2 score:415, expCount:1, expNums:348, expScores:415, srow:3634085
28877 chr6 137810252 137810921 wgEncodeRegTfbsClusteredV3 RBBP5 score:275, expCount:1, expNums:8, expScores:275, srow:3634086
28877 chr6 137809343 137810204 cpgIsland CpG: 73 length:862, cpgNum:73, gcNum:551, perCpg:16.9, perGc:63.9, obsExp:0.83, srow:22566
28877 chr6 137807343 137809342 cpgShore — values(x.gr)[overs$srow, ]:40819
28877 chr6 137810205 137812204 cpgShore — values(x.gr)[overs$srow, ]:40820
  • 12 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28877 cellmeth_recounts PrEC: 4, LNCaP: 94, DU145: 15
28877 cellmeth_diffreps_PrECvsLNCaP A=0, B=14, Length=340, Event=Up, log2FC=Inf, padj=0.000432533284720616
28877 cellmeth_diffreps_PrECvsLNCaP A=2, B=38, Length=440, Event=Up, log2FC=4.25, padj=2.41137742424673e-08
28877 cellmeth_diffreps_LNCaPvsDU145 A=14.97, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000816028517810598
28877 cellmeth_diffreps_LNCaPvsDU145 A=41.69, B=4.68, Length=480, Event=Down, log2FC=-3.16, padj=1.63487293387895e-06
28877 tcgameth site:cg03301848, B=0.5, L=0.67, H=0.65
28877 tcgameth site:cg07893921, B=0.14, L=0.49, H=0.43
28877 tcgameth site:cg14251870, B=0.13, L=0.52, H=0.52
28877 tcgameth site:cg21605341, B=0.63, L=0.72, H=0.71