DMR 28887 chr6:139351051-139351250 (200bp)

DMR Stats
Positionchr6:139351051-139351250 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesABRACL (0bp away)
ANODEV p-value0.00054093292264
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28887 ABRACL 25137 uc003qil.2 chr6 139349819 139364439 + 200 100.0 0.23 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
28887 ABRACL 25137 uc003qim.2 chr6 139349819 139364439 + 200 100.0 0.38 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28887 chr6 139349446 139351430 wgEncodeRegDnaseClusteredV2 124 score:1000, srow:1051901
28887 chr6 139349627 139351240 wgEncodeRegTfbsClusteredV3 RBBP5 score:272, expCount:2, expNums:8,33, expScores:209,272, srow:3638292
28887 chr6 139350570 139351173 wgEncodeRegTfbsClusteredV3 GATA1 score:248, expCount:1, expNums:582, expScores:248, srow:3638326
28887 chr6 139350613 139351212 wgEncodeRegTfbsClusteredV3 MYC score:321, expCount:4, expNums:560,575,600,624, expScores:149,321,124,281, srow:3638327
28887 chr6 139350641 139351138 wgEncodeRegTfbsClusteredV3 EBF1 score:193, expCount:2, expNums:86,292, expScores:193,179, srow:3638328
28887 chr6 139350691 139351090 wgEncodeRegTfbsClusteredV3 NR2F2 score:386, expCount:1, expNums:225, expScores:386, srow:3638331
28887 chr6 139350695 139351130 wgEncodeRegTfbsClusteredV3 MXI1 score:192, expCount:1, expNums:298, expScores:192, srow:3638332
28887 chr6 139350721 139351076 wgEncodeRegTfbsClusteredV3 NR2C2 score:311, expCount:1, expNums:318, expScores:311, srow:3638335
28887 chr6 139350735 139351079 wgEncodeRegTfbsClusteredV3 BHLHE40 score:423, expCount:3, expNums:284,423,472, expScores:311,177,423, srow:3638337
28887 chr6 139350778 139351101 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:140, expCount:1, expNums:151, expScores:140, srow:3638339
28887 chr6 139351127 139351133 phastConsElements100way lod=23 score:304, srow:7964491
28887 chr6 139351148 139351169 phastConsElements100way lod=16 score:268, srow:7964492
28887 chr6 139351190 139351193 phastConsElements100way lod=13 score:247, srow:7964493
28887 chr6 139350741 139352740 cpgShore — values(x.gr)[overs$srow, ]:40846
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28887 cellmeth_recounts PrEC: 3, LNCaP: 23, DU145: 1
28887 cellmeth_diffreps_LNCaPvsDU145 A=19.24, B=0.94, Length=320, Event=Down, log2FC=-4.36, padj=0.000956274272082085
28887 cellexp id=ENSG00000146386, name=ABRACL, PrEC=3715, str=3515, LNCaP=500, str=1087, DU145=1155, str=1281
28887 tcgameth site:cg12577850, B=0.34, L=0.57, H=0.53
28887 tcgaexp gene=ABRACL, entrez=58527, pos=chr6:139349819-139364439(+), B=865, L=997, M=1021, H=999