DMR 29 chr1:3030951-3031150 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:3030951-3031150 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.00124337529896 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 5.28 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 29 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 5.28 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 29 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 5.3 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 29 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 200 | 100.0 | 5.3 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 29 | chr1 | 3030598 | 3031227 | wgEncodeRegTfbsClusteredV3 | STAT5A | score:369, expCount:1, expNums:114, expScores:369, srow:8649 |
| 29 | chr1 | 3030603 | 3031198 | wgEncodeRegTfbsClusteredV3 | NFATC1 | score:450, expCount:1, expNums:96, expScores:450, srow:8650 |
| 29 | chr1 | 3030673 | 3030976 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:357, expCount:1, expNums:117, expScores:357, srow:8651 |
| 29 | chr1 | 3030711 | 3031026 | wgEncodeRegTfbsClusteredV3 | GABPA | score:177, expCount:1, expNums:180, expScores:177, srow:8652 |
| 29 | chr1 | 3030837 | 3031054 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:270, expCount:1, expNums:83, expScores:270, srow:8653 |
| 29 | chr1 | 3030558 | 3032557 | cpgShelf | — | values(x.gr)[overs$srow, ]:240 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 29 | cellmeth_recounts | PrEC: 423, LNCaP: 123, DU145: 63 |  |
| 29 | cellmeth_diffreps_PrECvsLNCaP | A=1149, B=177, Length=740, Event=Down, log2FC=-2.7, padj=0 |  |
| 29 | cellmeth_diffreps_PrECvsDU145 | A=1149, B=92, Length=740, Event=Down, log2FC=-3.64, padj=0 |  |
| 29 | cellmeth_diffreps_LNCaPvsDU145 | A=180.67, B=74.83, Length=500, Event=Down, log2FC=-1.27, padj=6.70754008848552e-09 |  |
| 29 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 29 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 29 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 29 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |