DMR 29025 chr7:153901-154150 (250bp)
| DMR Stats | |
|---|---|
| Position | chr7:153901-154150 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | AK024243, AK310146 (0bp away) |
| ANODEV p-value | 0.019270920098 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29025 | AK024243 | 26570 | uc003sio.1 | chr7 | 149597 | 154868 | + | 250 | 100.0 | 0.08 | 1 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
| 29025 | AK310146 | 26570 | uc010kry.1 | chr7 | 149744 | 154868 | + | 250 | 100.0 | 0.11 | 1 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 29025 | chr7 | 153627 | 154016 | wgEncodeRegTfbsClusteredV3 | MAX | score:193, expCount:1, expNums:223, expScores:193, srow:3691034 |
| 29025 | chr7 | 152039 | 154038 | cpgShelf | — | values(x.gr)[overs$srow, ]:36124 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 29025 | cellmeth_recounts | PrEC: 9, LNCaP: 4, DU145: 8 |  |
| 29025 | cellmeth_diffreps_PrECvsLNCaP | A=45, B=3, Length=480, Event=Down, log2FC=-3.91, padj=2.59466513534333e-09 |  |
| 29025 | cellmeth_diffreps_PrECvsLNCaP | A=152, B=11, Length=460, Event=Down, log2FC=-3.79, padj=0 |  |
| 29025 | cellmeth_diffreps_PrECvsDU145 | A=152, B=5, Length=460, Event=Down, log2FC=-4.93, padj=0 |  |
| 29025 | cellexp | id=ENSG00000240859, name=AC093627.10, PrEC=88, str=64, LNCaP=206, str=78, DU145=38, str=14 |  |