DMR 29440 chr7:100488751-100489200 (450bp)
| DMR Stats | |
|---|---|
| Position | chr7:100488751-100489200 (View on UCSC) |
| Width | 450bp |
| Genomic Context | promoter |
| Nearest Genes | ACHE, DJ051769 (0bp away) |
| ANODEV p-value | 0.00298577628593 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29440 | ACHE | 27459 | uc003uxd.3 | chr7 | 100487615 | 100492009 | - | 450 | 100.0 | 1.38 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (53.78), E3 (37.78), I3 (8.67), E4 (0) | 0.0 |
| 29440 | ACHE | 27459 | uc003uxe.3 | chr7 | 100487615 | 100493541 | - | 450 | 100.0 | 0.13 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (53.78), E4 (37.78), I4 (8.67), E5 (0) | 0.0 |
| 29440 | ACHE | 27459 | uc003uxf.3 | chr7 | 100487615 | 100493541 | - | 450 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (53.78), E4 (37.78), I4 (8.67), E5 (0) | 0.0 |
| 29440 | ACHE | 27459 | uc003uxg.3 | chr7 | 100487615 | 100493541 | - | 450 | 100.0 | 0.63 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (53.78), E4 (37.78), I4 (8.67), E5 (0) | 0.0 |
| 29440 | ACHE | 27459 | uc003uxh.3 | chr7 | 100487615 | 100493541 | - | 450 | 100.0 | 0.62 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (53.78), E4 (37.78), I4 (8.67), E5 (0) | 0.0 |
| 29440 | ACHE | 27459 | uc003uxi.3 | chr7 | 100487615 | 100493715 | - | 450 | 100.0 | 0.22 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (53.78), E4 (37.78), I4 (8.67), E5 (0) | 0.0 |
| 29440 | DJ051769 | 27460 | uc010lhm.1 | chr7 | 100488710 | 100488760 | + | 10 | 2.22 | 0.1 | 1 | 100.0 | E1 (2.22) | 100.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 29440 | chr7 | 100488361 | 100489055 | wgEncodeRegDnaseClusteredV2 | 33 | score:835, srow:1110721 |
| 29440 | chr7 | 100489086 | 100489455 | wgEncodeRegDnaseClusteredV2 | 49 | score:1000, srow:1110722 |
| 29440 | chr7 | 100488330 | 100488973 | wgEncodeRegTfbsClusteredV3 | SMARCA4 | score:159, expCount:1, expNums:475, expScores:159, srow:3827301 |
| 29440 | chr7 | 100488446 | 100488825 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:159, expCount:1, expNums:288, expScores:159, srow:3827302 |
| 29440 | chr7 | 100488508 | 100488871 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:203, expCount:1, expNums:88, expScores:203, srow:3827303 |
| 29440 | chr7 | 100488635 | 100488890 | wgEncodeRegTfbsClusteredV3 | ZBTB33 | score:131, expCount:1, expNums:246, expScores:131, srow:3827304 |
| 29440 | chr7 | 100489058 | 100489467 | wgEncodeRegTfbsClusteredV3 | FOSL2 | score:242, expCount:1, expNums:52, expScores:242, srow:3827305 |
| 29440 | chr7 | 100489109 | 100489508 | wgEncodeRegTfbsClusteredV3 | FOS | score:524, expCount:5, expNums:457,556,557,558,559, expScores:146,213,447,524,353, srow:3827306 |
| 29440 | chr7 | 100488890 | 100488890 | cosmic | COSM1244099 | srow:1100210 |
| 29440 | chr7 | 100488890 | 100488890 | cosmic | COSM1244098 | srow:1100211 |
| 29440 | chr7 | 100488909 | 100488909 | cosmic | COSM1643189 | srow:1100212 |
| 29440 | chr7 | 100488909 | 100488909 | cosmic | COSM1643188 | srow:1100213 |
| 29440 | chr7 | 100488787 | 100488811 | phastConsElements100way | lod=201 | score:518, srow:8500898 |
| 29440 | chr7 | 100488813 | 100488844 | phastConsElements100way | lod=299 | score:558, srow:8500899 |
| 29440 | chr7 | 100488846 | 100488853 | phastConsElements100way | lod=41 | score:361, srow:8500900 |
| 29440 | chr7 | 100488855 | 100488868 | phastConsElements100way | lod=53 | score:387, srow:8500901 |
| 29440 | chr7 | 100488870 | 100488898 | phastConsElements100way | lod=143 | score:485, srow:8500902 |
| 29440 | chr7 | 100488909 | 100488913 | phastConsElements100way | lod=56 | score:392, srow:8500903 |
| 29440 | chr7 | 100488918 | 100488928 | phastConsElements100way | lod=98 | score:447, srow:8500904 |
| 29440 | chr7 | 100488939 | 100488940 | phastConsElements100way | lod=17 | score:274, srow:8500905 |
| 29440 | chr7 | 100488948 | 100488962 | phastConsElements100way | lod=145 | score:486, srow:8500906 |
| 29440 | chr7 | 100488094 | 100489981 | cpgShore | — | values(x.gr)[overs$srow, ]:44719 |
- 22 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 29440 | cellmeth_recounts | PrEC: 7, LNCaP: 204, DU145: 8 |  |
| 29440 | cellmeth_diffreps_PrECvsLNCaP | A=10, B=162, Length=640, Event=Up, log2FC=4.02, padj=0 |  |
| 29440 | cellmeth_diffreps_LNCaPvsDU145 | A=173.19, B=7.48, Length=640, Event=Down, log2FC=-4.53, padj=0 |  |
| 29440 | cellexp | id=ENSG00000087085, name=ACHE, PrEC=16, str=135, LNCaP=68, str=16, DU145=56, str=41 |  |
| 29440 | tcgameth | site:cg04156293, B=0.15, L=0.67, H=0.62 |  |
| 29440 | tcgameth | site:cg22488857, B=0.23, L=0.51, H=0.53 |  |
| 29440 | tcgaexp | gene=ACHE, entrez=43, pos=chr7:100487615-100494539(-), B=346, L=335, M=357, H=344 |  |