DMR 29515 chr7:129421401-129423600 (2200bp)

DMR Stats
Positionchr7:129421401-129423600 (View on UCSC)
Width2200bp
Genomic Contextintergenic
Nearest GenesMIR183 (6546bp away)
ANODEV p-value4.110636427e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
29515 chr7 129421166 129423250 wgEncodeRegDnaseClusteredV2 60 score:1000, srow:1121012
29515 chr7 129423266 129423695 wgEncodeRegDnaseClusteredV2 7 score:534, srow:1121013
29515 chr7 129417045 129423798 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:11, expNums:3,6,13,15,17,19,21,36,38,40,43, expScores:168,327,675,270,195,124,355,269,282,234,258, srow:3869551
29515 chr7 129420838 129421647 wgEncodeRegTfbsClusteredV3 SUZ12 score:131, expCount:1, expNums:578, expScores:131, srow:3869630
29515 chr7 129421344 129421693 wgEncodeRegTfbsClusteredV3 HDAC2 score:131, expCount:1, expNums:27, expScores:131, srow:3869631
29515 chr7 129421459 129421948 wgEncodeRegTfbsClusteredV3 TAF1 score:144, expCount:1, expNums:157, expScores:144, srow:3869632
29515 chr7 129421561 129421936 wgEncodeRegTfbsClusteredV3 TBP score:204, expCount:1, expNums:359, expScores:204, srow:3869633
29515 chr7 129421573 129421812 wgEncodeRegTfbsClusteredV3 POLR2A score:511, expCount:1, expNums:78, expScores:511, srow:3869634
29515 chr7 129421764 129422019 wgEncodeRegTfbsClusteredV3 ZBTB33 score:158, expCount:1, expNums:246, expScores:158, srow:3869635
29515 chr7 129421781 129422380 wgEncodeRegTfbsClusteredV3 CTBP2 score:127, expCount:1, expNums:348, expScores:127, srow:3869636
29515 chr7 129421985 129422468 wgEncodeRegTfbsClusteredV3 SETDB1 score:129, expCount:1, expNums:533, expScores:129, srow:3869637
29515 chr7 129422034 129422843 wgEncodeRegTfbsClusteredV3 SUZ12 score:153, expCount:1, expNums:578, expScores:153, srow:3869638
29515 chr7 129422928 129423257 wgEncodeRegTfbsClusteredV3 MAX score:177, expCount:1, expNums:352, expScores:177, srow:3869639
29515 chr7 129422959 129423200 wgEncodeRegTfbsClusteredV3 USF1 score:353, expCount:2, expNums:161,265, expScores:351,353, srow:3869640
29515 chr7 129422959 129423234 wgEncodeRegTfbsClusteredV3 USF2 score:233, expCount:1, expNums:360, expScores:233, srow:3869641
29515 chr7 129421390 129421405 tfbsConsSites V$TAL1ALPHAE47_01 score:877, zScore:1.94, srow:4973861
29515 chr7 129421390 129421405 tfbsConsSites V$TAL1BETAITF2_01 score:878, zScore:2.24, srow:4973862
29515 chr7 129421649 129421663 tfbsConsSites V$SRF_C score:787, zScore:1.73, srow:4973863
29515 chr7 129421763 129421777 tfbsConsSites V$TATA_01 score:932, zScore:3, srow:4973864
29515 chr7 129421821 129421832 tfbsConsSites V$AREB6_02 score:900, zScore:1.72, srow:4973865
29515 chr7 129421836 129421851 tfbsConsSites V$HAND1E47_01 score:852, zScore:1.96, srow:4973866
29515 chr7 129422050 129422064 tfbsConsSites V$ISRE_01 score:780, zScore:1.66, srow:4973867
29515 chr7 129422080 129422101 tfbsConsSites V$MEF2_04 score:742, zScore:1.91, srow:4973868
29515 chr7 129422121 129422150 tfbsConsSites V$HOX13_01 score:716, zScore:1.87, srow:4973869
29515 chr7 129422131 129422143 tfbsConsSites V$MZF1_02 score:855, zScore:1.67, srow:4973870
  • Page 1 of 3
  • 25 of 61 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
29515 cellmeth_recounts PrEC: 68, LNCaP: 501, DU145: 58
29515 cellmeth_diffreps_PrECvsLNCaP A=33, B=301, Length=1540, Event=Up, log2FC=3.19, padj=0
29515 cellmeth_diffreps_PrECvsDU145 A=27, B=5, Length=340, Event=Down, log2FC=-2.43, padj=0.00174738210451335
29515 cellmeth_diffreps_PrECvsDU145 A=49, B=12, Length=340, Event=Down, log2FC=-2.03, padj=5.9629288738191e-05
29515 cellmeth_diffreps_PrECvsDU145 A=17, B=164, Length=1120, Event=Up, log2FC=3.27, padj=0
29515 cellmeth_diffreps_LNCaPvsDU145 A=321.78, B=9.35, Length=1540, Event=Down, log2FC=-5.1, padj=0
29515 cellmeth_diffreps_LNCaPvsDU145 A=98.35, B=14.97, Length=480, Event=Down, log2FC=-2.72, padj=5.72484404733085e-14
29515 cellexp id=ENSG00000242078, name=RP11-738B7.1, PrEC=1, str=2, LNCaP=23, str=15, DU145=25, str=12
29515 tcgameth site:cg07885629, B=0.33, L=0.57, H=0.56
29515 tcgameth site:cg19096571, B=0.36, L=0.56, H=0.55
29515 tcgameth site:cg20186067, B=0.24, L=0.54, H=0.5