DMR 29563 chr7:149120551-149120900 (350bp)

DMR Stats
Positionchr7:149120551-149120900 (View on UCSC)
Width350bp
Genomic Contextintergenic
Nearest GenesZNF777 (7553bp away)
ANODEV p-value9.31472435824e-05
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
29563 chr7 149120541 149120855 wgEncodeRegDnaseClusteredV2 13 score:335, srow:1129857
29563 chr7 149120886 149121135 wgEncodeRegDnaseClusteredV2 9 score:280, srow:1129858
29563 chr7 149120803 149120816 tfbsConsSites V$CEBPB_01 score:890, zScore:1.83, srow:5016494
29563 chr7 149120308 149122307 cpgShore — values(x.gr)[overs$srow, ]:45247
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
29563 cellmeth_recounts PrEC: 36, LNCaP: 640, DU145: 18
29563 cellmeth_diffreps_PrECvsLNCaP A=101, B=1432, Length=1400, Event=Up, log2FC=3.83, padj=0
29563 cellmeth_diffreps_PrECvsDU145 A=51, B=12, Length=380, Event=Down, log2FC=-2.09, padj=2.37743486452325e-05
29563 cellmeth_diffreps_LNCaPvsDU145 A=1530.87, B=24.32, Length=1360, Event=Down, log2FC=-5.98, padj=0
29563 cellexp id=ENSG00000261842, name=RP11-143I21.1, PrEC=1, str=2, LNCaP=1, str=1, DU145=4, str=2
29563 tcgameth site:cg24574963, B=0.74, L=0.87, H=0.85