DMR 29704 chr8:847051-847700 (650bp)
| DMR Stats | |
|---|---|
| Position | chr8:847051-847700 (View on UCSC) |
| Width | 650bp |
| Genomic Context | intron |
| Nearest Genes | ERICH1-AS1 (0bp away) |
| ANODEV p-value | 0.000238713933476 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29704 | ERICH1-AS1 | 28086 | uc003wpj.2 | chr8 | 687587 | 1087777 | + | 650 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
| 29704 | ERICH1-AS1 | 28086 | uc003wpk.3 | chr8 | 833198 | 982931 | + | 650 | 100.0 | 0.54 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 29704 | chr8 | 846486 | 847455 | wgEncodeRegDnaseClusteredV2 | 25 | score:371, srow:1137672 |
| 29704 | chr8 | 847486 | 848155 | wgEncodeRegDnaseClusteredV2 | 16 | score:778, srow:1137673 |
| 29704 | chr8 | 846104 | 848103 | cpgShelf | — | values(x.gr)[overs$srow, ]:38495 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 29704 | cellmeth_recounts | PrEC: 27, LNCaP: 5, DU145: 5 |  |
| 29704 | cellmeth_diffreps_PrECvsLNCaP | A=44, B=6, Length=400, Event=Down, log2FC=-2.87, padj=7.2509255272542e-07 |  |
| 29704 | cellmeth_diffreps_PrECvsDU145 | A=44, B=2, Length=520, Event=Down, log2FC=-4.46, padj=7.30425037622516e-10 |  |
| 29704 | cellexp | id=ENSG00000237647, name=ERICH1-AS1, PrEC=0, str=0, LNCaP=58, str=19, DU145=1, str=0 |  |
| 29704 | tcgameth | site:cg02730139, B=0.78, L=0.92, H=0.9 |  |