DMR 29790 chr8:23562401-23564600 (2200bp)

DMR Stats
Positionchr8:23562401-23564600 (View on UCSC)
Width2200bp
Genomic Contextpromoter
Nearest GenesNKX2-6 (0bp away)
ANODEV p-value2.43523266703e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
29790 NKX2-6 28305 uc011kzy.3 chr8 23559964 23564111 - 1711 77.77 0.28 0 44.95 E1 (12.45), I1 (65.32), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
29790 chr8 23562321 23563235 wgEncodeRegDnaseClusteredV2 10 score:178, srow:1148240
29790 chr8 23563366 23563515 wgEncodeRegDnaseClusteredV2 3 score:126, srow:1148241
29790 chr8 23563546 23563815 wgEncodeRegDnaseClusteredV2 5 score:180, srow:1148242
29790 chr8 23563881 23564750 wgEncodeRegDnaseClusteredV2 42 score:1000, srow:1148243
29790 chr8 23561196 23565012 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:8, expNums:6,15,17,21,36,38,40,43, expScores:610,246,167,339,257,200,265,422, srow:3951442
29790 chr8 23562337 23562646 wgEncodeRegTfbsClusteredV3 SUZ12 score:240, expCount:1, expNums:358, expScores:240, srow:3951446
29790 chr8 23562690 23563662 wgEncodeRegTfbsClusteredV3 SUZ12 score:191, expCount:2, expNums:358,578, expScores:140,191, srow:3951447
29790 chr8 23563960 23564269 wgEncodeRegTfbsClusteredV3 SUZ12 score:97, expCount:1, expNums:358, expScores:97, srow:3951448
29790 chr8 23563974 23564643 wgEncodeRegTfbsClusteredV3 RBBP5 score:173, expCount:1, expNums:8, expScores:173, srow:3951449
29790 chr8 23564095 23564409 wgEncodeRegTfbsClusteredV3 CTCF score:425, expCount:7, expNums:5,137,597,609,636,639,643, expScores:425,236,122,215,143,146,249, srow:3951450
29790 chr8 23564131 23564370 wgEncodeRegTfbsClusteredV3 RAD21 score:182, expCount:1, expNums:149, expScores:182, srow:3951451
29790 chr8 23564132 23564731 wgEncodeRegTfbsClusteredV3 CTBP2 score:124, expCount:1, expNums:348, expScores:124, srow:3951452
29790 chr8 23564145 23564534 wgEncodeRegTfbsClusteredV3 MAX score:404, expCount:2, expNums:223,352, expScores:194,404, srow:3951453
29790 chr8 23564161 23564650 wgEncodeRegTfbsClusteredV3 TAF1 score:177, expCount:1, expNums:157, expScores:177, srow:3951454
29790 chr8 23564178 23564453 wgEncodeRegTfbsClusteredV3 USF2 score:550, expCount:1, expNums:360, expScores:550, srow:3951455
29790 chr8 23564192 23564481 wgEncodeRegTfbsClusteredV3 ZNF143 score:163, expCount:1, expNums:361, expScores:163, srow:3951456
29790 chr8 23564215 23564422 wgEncodeRegTfbsClusteredV3 USF1 score:1000, expCount:1, expNums:161, expScores:1000, srow:3951457
29790 chr8 23564246 23564615 wgEncodeRegTfbsClusteredV3 POLR2A score:265, expCount:1, expNums:637, expScores:265, srow:3951458
29790 chr8 23564252 23564575 wgEncodeRegTfbsClusteredV3 SP1 score:225, expCount:1, expNums:153, expScores:225, srow:3951459
29790 chr8 23564295 23564399 wgEncodeRegTfbsClusteredV3 E2F6 score:288, expCount:1, expNums:215, expScores:288, srow:3951460
29790 chr8 23564322 23564611 wgEncodeRegTfbsClusteredV3 MAFK score:168, expCount:1, expNums:351, expScores:168, srow:3951461
29790 chr8 23564425 23564760 wgEncodeRegTfbsClusteredV3 YY1 score:181, expCount:1, expNums:162, expScores:181, srow:3951462
29790 chr8 23564458 23564701 wgEncodeRegTfbsClusteredV3 JUND score:150, expCount:1, expNums:142, expScores:150, srow:3951463
29790 chr8 23564491 23564800 wgEncodeRegTfbsClusteredV3 SUZ12 score:102, expCount:1, expNums:358, expScores:102, srow:3951464
29790 chr8 23563839 23563851 tfbsConsSites V$ZID_01 score:868, zScore:2.05, srow:5065491
  • Page 1 of 2
  • 25 of 45 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
29790 cellmeth_recounts PrEC: 5, LNCaP: 408, DU145: 132
29790 cellmeth_diffreps_PrECvsLNCaP A=8, B=168, Length=1340, Event=Up, log2FC=4.39, padj=0
29790 cellmeth_diffreps_PrECvsLNCaP A=0, B=172, Length=1200, Event=Up, log2FC=Inf, padj=0
29790 cellmeth_diffreps_PrECvsDU145 A=0, B=80, Length=1260, Event=Up, log2FC=Inf, padj=0
29790 cellmeth_diffreps_LNCaPvsDU145 A=96.21, B=7.48, Length=600, Event=Down, log2FC=-3.68, padj=0
29790 cellmeth_diffreps_LNCaPvsDU145 A=57.73, B=7.48, Length=400, Event=Down, log2FC=-2.95, padj=1.24539880371132e-08
29790 cellmeth_diffreps_LNCaPvsDU145 A=118.66, B=30.87, Length=520, Event=Down, log2FC=-1.94, padj=5.27285081115234e-11
29790 cellexp id=ENSG00000180053, name=NKX2-6, PrEC=0, str=0, LNCaP=0, str=1, DU145=0, str=0
29790 tcgameth site:cg00425918, B=0.26, L=0.46, H=0.45
29790 tcgameth site:cg01336781, B=0.14, L=0.41, H=0.41
29790 tcgameth site:cg03330710, B=0.3, L=0.43, H=0.45
29790 tcgameth site:cg03694713, B=0.19, L=0.48, H=0.55
29790 tcgameth site:cg05477514, B=0.26, L=0.47, H=0.47
29790 tcgameth site:cg13324546, B=0.15, L=0.44, H=0.4
29790 tcgameth site:cg14451926, B=0.3, L=0.56, H=0.56
29790 tcgameth site:cg15854847, B=0.19, L=0.5, H=0.51
29790 tcgameth site:cg20892260, B=0.24, L=0.57, H=0.56
29790 tcgameth site:cg22747746, B=0.13, L=0.5, H=0.52
29790 tcgaexp gene=NKX2-6, entrez=137814, pos=chr8:23559964-23564111(-), B=0, L=0, M=1, H=0