DMR 29918 chr8:56851951-56852750 (800bp)

DMR Stats
Positionchr8:56851951-56852750 (View on UCSC)
Width800bp
Genomic Contextintron
Nearest GenesLYN (0bp away)
ANODEV p-value1.74474200061e-08
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
29918 LYN 28493 uc003xsk.4 chr8 56792386 56925006 + 800 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
29918 LYN 28493 uc003xsl.4 chr8 56792386 56925006 + 800 100.0 0.13 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
29918 chr8 56851961 56852855 wgEncodeRegDnaseClusteredV2 84 score:1000, srow:1161167
29918 chr8 56851778 56852201 wgEncodeRegTfbsClusteredV3 MYC score:173, expCount:1, expNums:488, expScores:173, srow:3992459
29918 chr8 56851842 56853068 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:17, expNums:32,104,105,123,124,131,228,229,328,340,520,521,523,525,563,583,622, expScores:187,387,739,274,269,346,272,692,290,306,310,262,186,191,330,451,216, srow:3992460
29918 chr8 56851860 56852583 wgEncodeRegTfbsClusteredV3 RBBP5 score:195, expCount:1, expNums:33, expScores:195, srow:3992461
29918 chr8 56851869 56852188 wgEncodeRegTfbsClusteredV3 JUND score:197, expCount:1, expNums:350, expScores:197, srow:3992462
29918 chr8 56851876 56852191 wgEncodeRegTfbsClusteredV3 EBF1 score:330, expCount:2, expNums:86,292, expScores:330,242, srow:3992463
29918 chr8 56851901 56852404 wgEncodeRegTfbsClusteredV3 CHD1 score:204, expCount:2, expNums:23,287, expScores:204,203, srow:3992464
29918 chr8 56851905 56852440 wgEncodeRegTfbsClusteredV3 SIN3A score:170, expCount:1, expNums:312, expScores:170, srow:3992465
29918 chr8 56851911 56852449 wgEncodeRegTfbsClusteredV3 BHLHE40 score:281, expCount:2, expNums:284,472, expScores:281,193, srow:3992466
29918 chr8 56851912 56852732 wgEncodeRegTfbsClusteredV3 RELA score:480, expCount:6, expNums:300,325,327,331,335,337, expScores:189,480,157,220,288,268, srow:3992467
29918 chr8 56851926 56852165 wgEncodeRegTfbsClusteredV3 SPI1 score:159, expCount:1, expNums:126, expScores:159, srow:3992468
29918 chr8 56851935 56852386 wgEncodeRegTfbsClusteredV3 MAX score:292, expCount:1, expNums:223, expScores:292, srow:3992469
29918 chr8 56851942 56852361 wgEncodeRegTfbsClusteredV3 BCLAF1 score:190, expCount:1, expNums:84, expScores:190, srow:3992470
29918 chr8 56851943 56852956 wgEncodeRegTfbsClusteredV3 CCNT2 score:147, expCount:1, expNums:476, expScores:133, srow:3992471
29918 chr8 56851949 56852444 wgEncodeRegTfbsClusteredV3 HMGN3 score:123, expCount:1, expNums:501, expScores:123, srow:3992472
29918 chr8 56851960 56852899 wgEncodeRegTfbsClusteredV3 MAZ score:258, expCount:2, expNums:297,512, expScores:174,258, srow:3992473
29918 chr8 56851970 56852493 wgEncodeRegTfbsClusteredV3 HDAC1 score:206, expCount:1, expNums:26, expScores:206, srow:3992474
29918 chr8 56852000 56852309 wgEncodeRegTfbsClusteredV3 POU2F2 score:254, expCount:1, expNums:125, expScores:254, srow:3992475
29918 chr8 56852052 56852675 wgEncodeRegTfbsClusteredV3 PHF8 score:324, expCount:1, expNums:30, expScores:324, srow:3992476
29918 chr8 56852108 56852431 wgEncodeRegTfbsClusteredV3 TAF1 score:135, expCount:1, expNums:132, expScores:135, srow:3992477
29918 chr8 56852210 56852785 wgEncodeRegTfbsClusteredV3 KDM5B score:203, expCount:1, expNums:31, expScores:203, srow:3992478
29918 chr8 56852210 56852453 wgEncodeRegTfbsClusteredV3 EGR1 score:265, expCount:2, expNums:87,216, expScores:177,265, srow:3992479
29918 chr8 56852212 56852721 wgEncodeRegTfbsClusteredV3 SAP30 score:133, expCount:1, expNums:34, expScores:133, srow:3992480
29918 chr8 56852221 56852736 wgEncodeRegTfbsClusteredV3 CEBPB score:232, expCount:1, expNums:85, expScores:232, srow:3992481
29918 chr8 56852237 56852805 wgEncodeRegTfbsClusteredV3 MXI1 score:424, expCount:2, expNums:298,513, expScores:424,199, srow:3992482
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  • 25 of 82 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
29918 cellmeth_recounts PrEC: 4, LNCaP: 15, DU145: 4
29918 cellexp id=ENSG00000254087, name=LYN, PrEC=2072, str=3219, LNCaP=1123, str=2357, DU145=6881, str=6957
29918 tcgameth site:cg03388786, B=0.32, L=0.64, H=0.62
29918 tcgameth site:cg06248767, B=0.16, L=0.63, H=0.62
29918 tcgaexp gene=LYN, entrez=4067, pos=chr8:56792386-56925006(+), B=1520, L=1403, M=1517, H=1638