DMR 30 chr1:3086251-3086550 (300bp)
| DMR Stats | |
|---|---|
| Position | chr1:3086251-3086550 (View on UCSC) |
| Width | 300bp |
| Genomic Context | intron |
| Nearest Genes | PRDM16 (0bp away) |
| ANODEV p-value | 0.013307165071 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30 | PRDM16 | 117 | uc001akc.3 | chr1 | 2985742 | 3355185 | + | 300 | 100.0 | 5.63 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 30 | PRDM16 | 117 | uc001ake.3 | chr1 | 2985742 | 3355185 | + | 300 | 100.0 | 1.65 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 30 | PRDM16 | 117 | uc001akf.3 | chr1 | 2985742 | 3355185 | + | 300 | 100.0 | 1.32 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 30 | PRDM16 | 117 | uc009vlh.3 | chr1 | 2985742 | 3355185 | + | 300 | 100.0 | 1.65 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30 | chr1 | 3086206 | 3086595 | wgEncodeRegDnaseClusteredV2 | 6 | score:805, srow:2263 |
| 30 | chr1 | 3086437 | 3086452 | tfbsConsSites | V$MEF2_01 | score:776, zScore:2.1, srow:5839 |
| 30 | chr1 | 3086462 | 3086478 | tfbsConsSites | V$HNF1_C | score:827, zScore:2.34, srow:5840 |
| 30 | chr1 | 3086463 | 3086478 | tfbsConsSites | V$FREAC3_01 | score:809, zScore:1.85, srow:5841 |
| 30 | chr1 | 3086486 | 3086513 | tfbsConsSites | V$PAX5_02 | score:776, zScore:1.91, srow:5842 |
| 30 | chr1 | 3086501 | 3086513 | tfbsConsSites | V$OCT1_03 | score:901, zScore:2.3, srow:5843 |
| 30 | chr1 | 3086507 | 3086517 | tfbsConsSites | V$SREBP1_01 | score:851, zScore:1.7, srow:5844 |
| 30 | chr1 | 3086529 | 3086548 | tfbsConsSites | V$MYCMAX_03 | score:812, zScore:2.12, srow:5845 |
| 30 | chr1 | 3086532 | 3086545 | tfbsConsSites | V$MYCMAX_01 | score:800, zScore:1.77, srow:5846 |
| 30 | chr1 | 3086533 | 3086544 | tfbsConsSites | V$NMYC_01 | score:887, zScore:1.85, srow:5847 |
| 30 | chr1 | 3086542 | 3086553 | tfbsConsSites | V$AREB6_02 | score:921, zScore:2.02, srow:5848 |
| 30 | chr1 | 3086393 | 3086395 | phastConsElements100way | lod=20 | score:290, srow:13222 |
| 30 | chr1 | 3086399 | 3086402 | phastConsElements100way | lod=26 | score:316, srow:13223 |
| 30 | chr1 | 3086405 | 3086490 | phastConsElements100way | lod=861 | score:662, srow:13224 |
| 30 | chr1 | 3086493 | 3086628 | phastConsElements100way | lod=1667 | score:728, srow:13225 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30 | cellmeth_recounts | PrEC: 57, LNCaP: 6, DU145: 9 |  |
| 30 | cellmeth_diffreps_PrECvsLNCaP | A=85, B=5, Length=500, Event=Down, log2FC=-4.09, padj=0 |  |
| 30 | cellmeth_diffreps_PrECvsDU145 | A=84, B=8, Length=440, Event=Down, log2FC=-3.39, padj=0 |  |
| 30 | cellexp | id=ENSG00000142611, name=PRDM16, PrEC=8, str=18, LNCaP=18, str=10, DU145=49, str=42 |  |
| 30 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 30 | tcgaexp | gene=PRDM16, entrez=63976, pos=chr1:2985742-3355185(+), B=306, L=40, M=53, H=56 |  |
| 30 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |