DMR 30022 chr8:98788551-98789300 (750bp)

DMR Stats
Positionchr8:98788551-98789300 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesLAPTM4B (0bp away)
ANODEV p-value2.55421429938e-08
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30022 LAPTM4B 28744 uc003yia.3 chr8 98787809 98864830 + 750 100.0 0.15 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
30022 LAPTM4B 28744 uc010mbg.3 chr8 98787809 98864830 + 750 100.0 0.15 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30022 chr8 98788141 98789430 wgEncodeRegDnaseClusteredV2 98 score:946, srow:1174407
30022 chr8 98788008 98788702 wgEncodeRegTfbsClusteredV3 E2F1 score:1000, expCount:3, expNums:384,390,572, expScores:151,548,301, srow:4034816
30022 chr8 98788380 98789049 wgEncodeRegTfbsClusteredV3 RBBP5 score:182, expCount:1, expNums:8, expScores:182, srow:4034820
30022 chr8 98788448 98788851 wgEncodeRegTfbsClusteredV3 ZBTB7A score:161, expCount:1, expNums:247, expScores:161, srow:4034821
30022 chr8 98788466 98789015 wgEncodeRegTfbsClusteredV3 POLR2A score:283, expCount:3, expNums:62,146,168, expScores:211,269,283, srow:4034822
30022 chr8 98788467 98788946 wgEncodeRegTfbsClusteredV3 UBTF score:192, expCount:2, expNums:548,549, expScores:147,192, srow:4034823
30022 chr8 98788471 98788918 wgEncodeRegTfbsClusteredV3 MYC score:632, expCount:11, expNums:347,485,486,487,488,489,490,560,620,624,626, expScores:203,114,116,373,221,632,155,173,232,308,313, srow:4034824
30022 chr8 98788473 98788848 wgEncodeRegTfbsClusteredV3 TBP score:180, expCount:1, expNums:359, expScores:180, srow:4034825
30022 chr8 98788486 98788971 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:6, expNums:223,278,352,395,460,511, expScores:1000,395,153,432,480,934, srow:4034826
30022 chr8 98788494 98788933 wgEncodeRegTfbsClusteredV3 CBX3 score:319, expCount:1, expNums:211, expScores:319, srow:4034827
30022 chr8 98788500 98788899 wgEncodeRegTfbsClusteredV3 MXI1 score:259, expCount:1, expNums:441, expScores:259, srow:4034828
30022 chr8 98788504 98788921 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:2, expNums:215,495, expScores:807,1000, srow:4034829
30022 chr8 98788507 98789002 wgEncodeRegTfbsClusteredV3 HMGN3 score:124, expCount:1, expNums:501, expScores:124, srow:4034830
30022 chr8 98788519 98788974 wgEncodeRegTfbsClusteredV3 CCNT2 score:276, expCount:1, expNums:476, expScores:276, srow:4034831
30022 chr8 98788524 98789317 wgEncodeRegTfbsClusteredV3 CHD1 score:236, expCount:2, expNums:4,344, expScores:236,162, srow:4034832
30022 chr8 98788529 98788778 wgEncodeRegTfbsClusteredV3 TAF1 score:336, expCount:1, expNums:157, expScores:336, srow:4034833
30022 chr8 98788538 98789057 wgEncodeRegTfbsClusteredV3 SIN3A score:253, expCount:1, expNums:357, expScores:253, srow:4034834
30022 chr8 98788540 98788875 wgEncodeRegTfbsClusteredV3 BHLHE40 score:498, expCount:2, expNums:423,472, expScores:158,498, srow:4034835
30022 chr8 98788546 98788805 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:128, expCount:1, expNums:232, expScores:128, srow:4034836
30022 chr8 98788571 98788826 wgEncodeRegTfbsClusteredV3 GATA2 score:174, expCount:1, expNums:221, expScores:174, srow:4034837
30022 chr8 98788577 98788886 wgEncodeRegTfbsClusteredV3 GABPA score:135, expCount:1, expNums:220, expScores:135, srow:4034838
30022 chr8 98788585 98788948 wgEncodeRegTfbsClusteredV3 TEAD4 score:329, expCount:1, expNums:240, expScores:329, srow:4034839
30022 chr8 98788589 98788912 wgEncodeRegTfbsClusteredV3 BACH1 score:217, expCount:1, expNums:341, expScores:217, srow:4034840
30022 chr8 98788592 98788874 wgEncodeRegTfbsClusteredV3 USF1 score:159, expCount:2, expNums:243,265, expScores:159,124, srow:4034841
30022 chr8 98788610 98788853 wgEncodeRegTfbsClusteredV3 EGR1 score:174, expCount:1, expNums:216, expScores:174, srow:4034842
  • Page 1 of 2
  • 25 of 35 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30022 cellmeth_recounts PrEC: 12, LNCaP: 181, DU145: 0
30022 cellmeth_diffreps_PrECvsLNCaP A=8, B=137, Length=600, Event=Up, log2FC=4.1, padj=0
30022 cellmeth_diffreps_LNCaPvsDU145 A=147.53, B=0, Length=680, Event=Down, log2FC=-Inf, padj=0
30022 cellexp id=ENSG00000104341, name=LAPTM4B, PrEC=4408, str=7184, LNCaP=3969, str=3023, DU145=14211, str=15170
30022 tcgameth site:cg04517323, B=0.27, L=0.47, H=0.44
30022 tcgameth site:cg07673230, B=0.78, L=0.84, H=0.86
30022 tcgaexp gene=LAPTM4B, entrez=55353, pos=chr8:98787809-98864830(+), B=3697, L=2399, M=2124, H=2686