DMR 30027 chr8:99951151-99952800 (1650bp)
| DMR Stats | |
|---|---|
| Position | chr8:99951151-99952800 (View on UCSC) |
| Width | 1650bp |
| Genomic Context | intron |
| Nearest Genes | STK3 (0bp away) |
| ANODEV p-value | 5.89698428977e-10 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30027 | STK3 | 28755 | uc003yio.4 | chr8 | 99466859 | 99954799 | - | 1650 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30027 | chr8 | 99951041 | 99951415 | wgEncodeRegDnaseClusteredV2 | 6 | score:258, srow:1175177 |
| 30027 | chr8 | 99951541 | 99953235 | wgEncodeRegDnaseClusteredV2 | 82 | score:491, srow:1175178 |
| 30027 | chr8 | 99950887 | 99951196 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:92, expCount:1, expNums:358, expScores:92, srow:4036666 |
| 30027 | chr8 | 99951043 | 99955332 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:4, expNums:6,21,36,43, expScores:297,326,262,332, srow:4036667 |
| 30027 | chr8 | 99951991 | 99952590 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:153, expCount:1, expNums:348, expScores:153, srow:4036668 |
| 30027 | chr8 | 99952037 | 99952822 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:446, expCount:5, expNums:105,334,336,338,340, expScores:446,152,181,237,186, srow:4036669 |
| 30027 | chr8 | 99952259 | 99952568 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:178, expCount:1, expNums:358, expScores:178, srow:4036670 |
| 30027 | chr8 | 99952589 | 99952884 | wgEncodeRegTfbsClusteredV3 | GABPA | score:181, expCount:1, expNums:91, expScores:181, srow:4036671 |
| 30027 | chr8 | 99951882 | 99951889 | tfbsConsSites | V$STAT1_03 | score:986, zScore:1.68, srow:5190863 |
| 30027 | chr8 | 99951563 | 99951581 | phastConsElements100way | lod=27 | score:320, srow:8976080 |
| 30027 | chr8 | 99952021 | 99954686 | cpgIsland | CpG: 222 | length:2666, cpgNum:222, gcNum:1784, perCpg:16.7, perGc:66.9, obsExp:0.74, srow:25894 |
| 30027 | chr8 | 99950021 | 99952020 | cpgShore | — | values(x.gr)[overs$srow, ]:46889 |
- 12 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30027 | cellmeth_recounts | PrEC: 154, LNCaP: 1478, DU145: 72 |  |
| 30027 | cellmeth_diffreps_PrECvsLNCaP | A=192, B=3425, Length=3200, Event=Up, log2FC=4.16, padj=0 |  |
| 30027 | cellmeth_diffreps_PrECvsDU145 | A=215, B=33, Length=1040, Event=Down, log2FC=-2.7, padj=0 |  |
| 30027 | cellmeth_diffreps_LNCaPvsDU145 | A=3884.91, B=54.25, Length=4180, Event=Down, log2FC=-6.16, padj=0 |  |
| 30027 | cellexp | id=ENSG00000104375, name=STK3, PrEC=2854, str=2078, LNCaP=1180, str=1725, DU145=1916, str=2160 |  |
| 30027 | tcgameth | site:cg01172183, B=0.4, L=0.58, H=0.56 |  |
| 30027 | tcgameth | site:cg01407477, B=0.79, L=0.84, H=0.82 |  |
| 30027 | tcgameth | site:cg03020554, B=0.54, L=0.67, H=0.66 |  |
| 30027 | tcgameth | site:cg05236677, B=0.36, L=0.56, H=0.56 |  |
| 30027 | tcgameth | site:cg06992285, B=0.48, L=0.72, H=0.7 |  |
| 30027 | tcgameth | site:cg12194701, B=0.22, L=0.36, H=0.39 |  |
| 30027 | tcgameth | site:cg14888916, B=0.74, L=0.83, H=0.82 |  |
| 30027 | tcgameth | site:cg15830431, B=0.12, L=0.28, H=0.28 |  |
| 30027 | tcgameth | site:cg16531209, B=0.66, L=0.81, H=0.8 |  |
| 30027 | tcgaexp | gene=STK3, entrez=6788, pos=chr8:99466859-99954799(-), B=1544, L=1355, M=1551, H=1834 |  |