DMR Stats
Positionchr9:72801-72950 (View on UCSC)
Width150bp
Genomic Contextpromoter
Nearest GenesAY343892 (0bp away)
ANODEV p-value0.00232667518461
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30188 AY343892 29105 uc003zfx.3 chr9 72698 75294 + 150 100.0 0.08 1 100.0 E1 (10.67), I1 (90), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30188 chr9 72579 73501 wgEncodeRegTfbsClusteredV3 EZH2 score:290, expCount:3, expNums:15,36,40, expScores:290,234,220, srow:4111671
30188 chr9 72945 73245 wgEncodeRegTfbsClusteredV3 CTCF score:377, expCount:2, expNums:595,688, expScores:377,115, srow:4111672
30188 chr9 72843 72850 phastConsElements100way lod=30 score:330, srow:9110618
30188 chr9 70961 72960 cpgShore values(x.gr)[overs$srow, ]:47572
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30188 cellmeth_recounts PrEC: 1, LNCaP: 50, DU145: 0
30188 cellmeth_diffreps_PrECvsLNCaP A=2, B=60, Length=680, Event=Up, log2FC=4.91, padj=2.67853354721823e-14
30188 cellmeth_diffreps_LNCaPvsDU145 A=64.14, B=0, Length=700, Event=Down, log2FC=-Inf, padj=0
30188 cellexp id=ENSG00000144140, name=RP11-143M1.7, PrEC=0, str=0, LNCaP=0, str=0, DU145=54, str=59
30188 cellexp id=ENSG00000225655, name=RP11-143M1.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=30, str=24