DMR Stats | |
---|---|
Position | chr9:72801-72950 (View on UCSC) |
Width | 150bp |
Genomic Context | promoter |
Nearest Genes | AY343892 (0bp away) |
ANODEV p-value | 0.00232667518461 |
Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
30188 | AY343892 | 29105 | uc003zfx.3 | chr9 | 72698 | 75294 | + | 150 | 100.0 | 0.08 | 1 | 100.0 | E1 (10.67), I1 (90), E2 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
30188 | chr9 | 72579 | 73501 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:290, expCount:3, expNums:15,36,40, expScores:290,234,220, srow:4111671 |
30188 | chr9 | 72945 | 73245 | wgEncodeRegTfbsClusteredV3 | CTCF | score:377, expCount:2, expNums:595,688, expScores:377,115, srow:4111672 |
30188 | chr9 | 72843 | 72850 | phastConsElements100way | lod=30 | score:330, srow:9110618 |
30188 | chr9 | 70961 | 72960 | cpgShore | — | values(x.gr)[overs$srow, ]:47572 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
30188 | cellmeth_recounts | PrEC: 1, LNCaP: 50, DU145: 0 | |
30188 | cellmeth_diffreps_PrECvsLNCaP | A=2, B=60, Length=680, Event=Up, log2FC=4.91, padj=2.67853354721823e-14 | |
30188 | cellmeth_diffreps_LNCaPvsDU145 | A=64.14, B=0, Length=700, Event=Down, log2FC=-Inf, padj=0 | |
30188 | cellexp | id=ENSG00000144140, name=RP11-143M1.7, PrEC=0, str=0, LNCaP=0, str=0, DU145=54, str=59 | |
30188 | cellexp | id=ENSG00000225655, name=RP11-143M1.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=30, str=24 |