DMR 30189 chr9:73751-74150 (400bp)

DMR Stats
Positionchr9:73751-74150 (View on UCSC)
Width400bp
Genomic Contextintron
Nearest GenesAY343892 (0bp away)
ANODEV p-value0.000750178423611
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 2.0 (22.22 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30189 AY343892 29105 uc003zfx.3 chr9 72698 75294 + 400 100.0 0.06 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30189 chr9 72966 74055 wgEncodeRegDnaseClusteredV2 62 score:501, srow:1198063
30189 chr9 74146 74495 wgEncodeRegDnaseClusteredV2 8 score:200, srow:1198064
30189 chr9 73904 73933 tfbsConsSites V$PAX4_04 score:724, zScore:1.66, srow:5283137
30189 chr9 73955 73970 tfbsConsSites V$RSRFC4_01 score:808, zScore:1.85, srow:5283138
30189 chr9 73956 73971 tfbsConsSites V$MEF2_01 score:849, zScore:3.57, srow:5283139
30189 chr9 74008 74025 tfbsConsSites V$IRF7_01 score:814, zScore:1.99, srow:5283140
30189 chr9 73883 73901 phastConsElements100way lod=39 score:356, srow:9110631
30189 chr9 73918 73954 phastConsElements100way lod=91 score:440, srow:9110632
30189 chr9 73957 74026 phastConsElements100way lod=339 score:570, srow:9110633
30189 chr9 74061 74075 phastConsElements100way lod=15 score:262, srow:9110634
30189 chr9 74080 74086 phastConsElements100way lod=20 score:290, srow:9110635
30189 chr9 74105 74112 phastConsElements100way lod=44 score:368, srow:9110636
30189 chr9 74117 74124 phastConsElements100way lod=34 score:343, srow:9110637
30189 chr9 74126 74136 phastConsElements100way lod=47 score:375, srow:9110638
30189 chr9 72961 73877 cpgIsland CpG: 106 length:917, cpgNum:106, gcNum:641, perCpg:23.1, perGc:69.9, obsExp:0.95, srow:26287
30189 chr9 73878 75877 cpgShore — values(x.gr)[overs$srow, ]:47573
  • 16 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30189 cellmeth_recounts PrEC: 2, LNCaP: 155, DU145: 3
30189 cellmeth_diffreps_PrECvsLNCaP A=3, B=124, Length=600, Event=Up, log2FC=5.37, padj=0
30189 cellmeth_diffreps_LNCaPvsDU145 A=132.56, B=1.87, Length=620, Event=Down, log2FC=-6.15, padj=0
30189 cellexp id=ENSG00000225655, name=RP11-143M1.2, PrEC=0, str=0, LNCaP=0, str=0, DU145=30, str=24