DMR 30190 chr9:112901-113100 (200bp)

DMR Stats
Positionchr9:112901-113100 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesFOXD4 (3130bp away)
ANODEV p-value1.40724280761e-05
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30190 chr9 112521 113030 wgEncodeRegDnaseClusteredV2 16 score:166, srow:1198073
30190 chr9 112640 115552 wgEncodeRegTfbsClusteredV3 EZH2 score:734, expCount:10, expNums:6,15,17,19,21,25,36,38,40,43, expScores:407,255,201,186,321,262,210,203,235,374, srow:4111676
30190 chr9 112917 114839 cpgIsland CpG: 210 length:1923, cpgNum:210, gcNum:1279, perCpg:21.8, perGc:66.5, obsExp:0.99, srow:26288
30190 chr9 110917 112916 cpgShore — values(x.gr)[overs$srow, ]:47574
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30190 cellmeth_recounts PrEC: 1, LNCaP: 150, DU145: 1
30190 cellmeth_diffreps_PrECvsLNCaP A=1, B=1513, Length=2220, Event=Up, log2FC=10.56, padj=0
30190 cellmeth_diffreps_LNCaPvsDU145 A=1617.47, B=5.61, Length=2220, Event=Down, log2FC=-8.17, padj=0
30190 cellexp id=ENSG00000231808, name=RP11-143M1.4, PrEC=0, str=0, LNCaP=0, str=1, DU145=1, str=5