DMR 30522 chr9:116918601-116919100 (500bp)
| DMR Stats | |
|---|---|
| Position | chr9:116918601-116919100 (View on UCSC) |
| Width | 500bp |
| Genomic Context | promoter |
| Nearest Genes | COL27A1 (0bp away) |
| ANODEV p-value | 1.23176388595e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 2.0 (22.22 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30522 | COL27A1 | 29958 | uc011lxl.2 | chr9 | 116918231 | 117072975 | + | 500 | 100.0 | 0.07 | 0 | 26.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0), I37 (0), E38 (0), I38 (0), E39 (0), I39 (0), E40 (0), I40 (0), E41 (0), I41 (0), E42 (0), I42 (0), E43 (0), I43 (0), E44 (0), I44 (0), E45 (0), I45 (0), E46 (0), I46 (0), E47 (0), I47 (0), E48 (0), I48 (0), E49 (0), I49 (0), E50 (0), I50 (0), E51 (0), I51 (0), E52 (0), I52 (0), E53 (0), I53 (0), E54 (0), I54 (0), E55 (0), I55 (0), E56 (0), I56 (0), E57 (0), I57 (0), E58 (0), I58 (0), E59 (0), I59 (0), E60 (0), I60 (0), E61 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30522 | chr9 | 116918586 | 116919735 | wgEncodeRegDnaseClusteredV2 | 107 | score:1000, srow:1234123 |
| 30522 | chr9 | 116918583 | 116919102 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:214, expCount:1, expNums:357, expScores:214, srow:4220522 |
| 30522 | chr9 | 116918619 | 116918874 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:232, expCount:1, expNums:462, expScores:232, srow:4220523 |
| 30522 | chr9 | 116918865 | 116919288 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:607, expCount:2, expNums:192,465, expScores:219,607, srow:4220524 |
| 30522 | chr9 | 116918940 | 116919369 | wgEncodeRegTfbsClusteredV3 | CTCF | score:697, expCount:37, expNums:16,18,37,39,42,44,137,463,595,597,598,635,636,639,640,641,642,643,646,657,658,659,661,662,664,668,669,671,672,673,674,678,682,683,685,686,688, expScores:105,109,308,121,153,144,162,343,452,694,574,697,348,441,221,210,576,331,548,164,210,197,235,366,149,151,153,156,200,204,367,100,309,211,116,189,379, srow:4220525 |
| 30522 | chr9 | 116919058 | 116919314 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:277, expCount:5, expNums:149,193,264,448,466, expScores:190,256,270,172,277, srow:4220526 |
| 30522 | chr9 | 116919005 | 116919016 | tfbsConsSites | V$NFKB_C | score:924, zScore:3.01, srow:5462860 |
| 30522 | chr9 | 116919006 | 116919015 | tfbsConsSites | V$NFKAPPAB_01 | score:927, zScore:2.08, srow:5462861 |
| 30522 | chr9 | 116919050 | 116919059 | tfbsConsSites | V$NFKAPPAB50_01 | score:890, zScore:2.13, srow:5462862 |
| 30522 | chr9 | 116919050 | 116919059 | tfbsConsSites | V$NFKAPPAB65_01 | score:920, zScore:2.11, srow:5462863 |
| 30522 | chr9 | 116919051 | 116919063 | tfbsConsSites | V$IK3_01 | score:875, zScore:2.16, srow:5462864 |
| 30522 | chr9 | 116919052 | 116919063 | tfbsConsSites | V$IK2_01 | score:951, zScore:2.03, srow:5462865 |
| 30522 | chr9 | 116918660 | 116918663 | phastConsElements100way | lod=20 | score:290, srow:9427243 |
| 30522 | chr9 | 116918686 | 116918687 | phastConsElements100way | lod=14 | score:255, srow:9427244 |
| 30522 | chr9 | 116918784 | 116918789 | phastConsElements100way | lod=29 | score:327, srow:9427245 |
| 30522 | chr9 | 116918826 | 116918834 | phastConsElements100way | lod=17 | score:274, srow:9427246 |
| 30522 | chr9 | 116918847 | 116918851 | phastConsElements100way | lod=22 | score:300, srow:9427247 |
| 30522 | chr9 | 116918870 | 116918874 | phastConsElements100way | lod=13 | score:247, srow:9427248 |
| 30522 | chr9 | 116918913 | 116918921 | phastConsElements100way | lod=24 | score:308, srow:9427249 |
| 30522 | chr9 | 116918924 | 116918939 | phastConsElements100way | lod=15 | score:262, srow:9427250 |
| 30522 | chr9 | 116919059 | 116919070 | phastConsElements100way | lod=16 | score:268, srow:9427251 |
| 30522 | chr9 | 116918523 | 116920522 | cpgShore | — | values(x.gr)[overs$srow, ]:48799 |
- 22 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30522 | cellmeth_recounts | PrEC: 0, LNCaP: 544, DU145: 10 |  |
| 30522 | cellmeth_diffreps_PrECvsLNCaP | A=9, B=541, Length=1100, Event=Up, log2FC=5.91, padj=0 |  |
| 30522 | cellmeth_diffreps_LNCaPvsDU145 | A=580.49, B=17.77, Length=1140, Event=Down, log2FC=-5.03, padj=0 |  |
| 30522 | cellexp | id=ENSG00000196739, name=COL27A1, PrEC=3355, str=9551, LNCaP=71, str=18, DU145=245, str=184 |  |
| 30522 | tcgaexp | gene=COL27A1, entrez=85301, pos=chr9:116918231-117072975(+), B=785, L=378, M=352, H=423 |  |