DMR 30647 chr9:132084051-132084200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr9:132084051-132084200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | C9orf106 (0bp away) |
| ANODEV p-value | 0.0388272723424 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30647 | C9orf106 | 30159 | uc004bxs.2 | chr9 | 132083295 | 132084882 | + | 150 | 100.0 | 0.54 | 0 | 0.0 | E1 (0), I1 (13.33), E2 (86.67) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30647 | chr9 | 132084061 | 132084450 | wgEncodeRegDnaseClusteredV2 | 4 | score:163, srow:1243787 |
| 30647 | chr9 | 132083861 | 132084100 | wgEncodeRegTfbsClusteredV3 | FOXA1 | score:235, expCount:1, expNums:271, expScores:235, srow:4256199 |
| 30647 | chr9 | 132083961 | 132084270 | wgEncodeRegTfbsClusteredV3 | MYC | score:248, expCount:1, expNums:624, expScores:248, srow:4256200 |
| 30647 | chr9 | 132084003 | 132084471 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:400, expCount:1, expNums:632, expScores:316, srow:4256201 |
| 30647 | chr9 | 132084135 | 132084135 | cosmic | COSM222165 | srow:1217646 |
| 30647 | chr9 | 132084163 | 132084163 | cosmic | COSM1167704 | srow:1217647 |
| 30647 | chr9 | 132083583 | 132085582 | cpgShore | — | values(x.gr)[overs$srow, ]:49135 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30647 | cellmeth_recounts | PrEC: 17, LNCaP: 6, DU145: 0 |  |
| 30647 | cellmeth_diffreps_PrECvsLNCaP | A=26, B=5, Length=360, Event=Down, log2FC=-2.38, padj=0.00263389182989827 |  |
| 30647 | cellmeth_diffreps_PrECvsDU145 | A=26, B=0, Length=380, Event=Down, log2FC=-Inf, padj=1.82506503014393e-07 |  |
| 30647 | cellexp | id=ENSG00000179082, name=C9orf106, PrEC=1, str=2, LNCaP=89, str=34, DU145=1, str=0 |  |
| 30647 | tcgaexp | gene=C9orf106, entrez=414318, pos=chr9:132083295-132084882(+), B=11, L=5, M=5, H=7 |  |