DMR 30842 chr10:671001-671300 (300bp)
| DMR Stats | |
|---|---|
| Position | chr10:671001-671300 (View on UCSC) |
| Width | 300bp |
| Genomic Context | intron |
| Nearest Genes | DIP2C (0bp away) |
| ANODEV p-value | 0.00420612428759 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30842 | DIP2C | 2874 | uc001ifp.3 | chr10 | 320130 | 735608 | - | 300 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 30842 | chr10 | 670806 | 671015 | wgEncodeRegDnaseClusteredV2 | 11 | score:435, srow:120540 |
| 30842 | chr10 | 671046 | 671650 | wgEncodeRegDnaseClusteredV2 | 81 | score:1000, srow:120541 |
| 30842 | chr10 | 670886 | 671561 | wgEncodeRegTfbsClusteredV3 | KAP1 | score:355, expCount:1, expNums:365, expScores:355, srow:439378 |
| 30842 | chr10 | 670940 | 671339 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:973, expCount:1, expNums:368, expScores:973, srow:439379 |
| 30842 | chr10 | 670940 | 671335 | wgEncodeRegTfbsClusteredV3 | JUNB | score:152, expCount:1, expNums:593, expScores:152, srow:439380 |
| 30842 | chr10 | 670988 | 671263 | wgEncodeRegTfbsClusteredV3 | MAX | score:232, expCount:1, expNums:576, expScores:232, srow:439381 |
| 30842 | chr10 | 670994 | 671449 | wgEncodeRegTfbsClusteredV3 | JUND | score:995, expCount:2, expNums:507,594, expScores:995,434, srow:439382 |
| 30842 | chr10 | 671029 | 671344 | wgEncodeRegTfbsClusteredV3 | MYC | score:230, expCount:1, expNums:575, expScores:230, srow:439383 |
| 30842 | chr10 | 671063 | 671221 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:563, expCount:1, expNums:251, expScores:563, srow:439384 |
| 30842 | chr10 | 671064 | 671307 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:149, expCount:1, expNums:216, expScores:149, srow:439385 |
| 30842 | chr10 | 671067 | 671382 | wgEncodeRegTfbsClusteredV3 | EP300 | score:188, expCount:1, expNums:519, expScores:188, srow:439386 |
| 30842 | chr10 | 671071 | 671330 | wgEncodeRegTfbsClusteredV3 | FOSL2 | score:219, expCount:1, expNums:176, expScores:219, srow:439387 |
| 30842 | chr10 | 671081 | 671316 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:168, expCount:1, expNums:466, expScores:168, srow:439388 |
| 30842 | chr10 | 671093 | 671376 | wgEncodeRegTfbsClusteredV3 | FOS | score:271, expCount:2, expNums:478,590, expScores:141,271, srow:439389 |
| 30842 | chr10 | 671106 | 671335 | wgEncodeRegTfbsClusteredV3 | JUN | score:268, expCount:1, expNums:484, expScores:268, srow:439390 |
| 30842 | chr10 | 671088 | 671103 | tfbsConsSites | V$FREAC2_01 | score:851, zScore:2.41, srow:501712 |
| 30842 | chr10 | 671088 | 671103 | tfbsConsSites | V$FREAC7_01 | score:850, zScore:1.71, srow:501713 |
| 30842 | chr10 | 671222 | 671233 | tfbsConsSites | V$MEIS1_01 | score:892, zScore:1.65, srow:501714 |
| 30842 | chr10 | 671139 | 671151 | phastConsElements100way | lod=28 | score:323, srow:867698 |
| 30842 | chr10 | 671191 | 671195 | phastConsElements100way | lod=17 | score:274, srow:867699 |
| 30842 | chr10 | 671225 | 671240 | phastConsElements100way | lod=40 | score:359, srow:867700 |
| 30842 | chr10 | 671245 | 671255 | phastConsElements100way | lod=16 | score:268, srow:867701 |
| 30842 | chr10 | 669337 | 671336 | cpgShore | — | values(x.gr)[overs$srow, ]:4590 |
- 23 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 30842 | cellmeth_recounts | PrEC: 17, LNCaP: 4, DU145: 5 |  |
| 30842 | cellexp | id=ENSG00000151240, name=DIP2C, PrEC=374, str=718, LNCaP=1767, str=1597, DU145=1160, str=940 |  |
| 30842 | tcgameth | site:cg17293868, B=0.4, L=0.5, H=0.46 |  |
| 30842 | tcgaexp | gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0 |  |
| 30842 | tcgaexp | gene=DIP2C, entrez=22982, pos=chr10:320130-735608(-), B=2849, L=2208, M=2152, H=2088 |  |