DMR 30995 chr10:43428601-43429650 (1050bp)

DMR Stats
Positionchr10:43428601-43429650 (View on UCSC)
Width1050bp
Genomic Contextintergenic
Nearest GenesMIR5100 (63360bp away)
ANODEV p-value2.75431190818e-09
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30995 chr10 43428201 43429415 wgEncodeRegDnaseClusteredV2 39 score:1000, srow:138869
30995 chr10 43429426 43429815 wgEncodeRegDnaseClusteredV2 40 score:1000, srow:138870
30995 chr10 43428401 43428704 wgEncodeRegTfbsClusteredV3 ESR1 score:288, expCount:2, expNums:74,75, expScores:288,99, srow:496725
30995 chr10 43428712 43429347 wgEncodeRegTfbsClusteredV3 POLR2A score:349, expCount:1, expNums:147, expScores:349, srow:496726
30995 chr10 43428766 43429675 wgEncodeRegTfbsClusteredV3 EZH2 score:319, expCount:1, expNums:6, expScores:319, srow:496727
30995 chr10 43429079 43429568 wgEncodeRegTfbsClusteredV3 TAF1 score:142, expCount:1, expNums:157, expScores:142, srow:496728
30995 chr10 43429413 43429728 wgEncodeRegTfbsClusteredV3 EP300 score:359, expCount:1, expNums:263, expScores:359, srow:496729
30995 chr10 43429562 43429877 wgEncodeRegTfbsClusteredV3 CTCF score:134, expCount:1, expNums:645, expScores:134, srow:496730
30995 chr10 43429482 43429499 tfbsConsSites V$NF1_Q6 score:870, zScore:1.69, srow:564929
30995 chr10 43429499 43429510 tfbsConsSites V$CREB_02 score:855, zScore:1.75, srow:564930
30995 chr10 43429587 43429594 tfbsConsSites V$CREBP1CJUN_01 score:935, zScore:2.25, srow:564931
30995 chr10 43429587 43429594 tfbsConsSites V$CREB_01 score:906, zScore:1.78, srow:564932
30995 chr10 43429367 43429374 phastConsElements100way lod=21 score:295, srow:984709
30995 chr10 43429416 43429424 phastConsElements100way lod=20 score:290, srow:984710
30995 chr10 43429484 43429488 phastConsElements100way lod=18 score:280, srow:984711
30995 chr10 43429541 43429544 phastConsElements100way lod=13 score:247, srow:984712
30995 chr10 43429574 43429582 phastConsElements100way lod=23 score:304, srow:984713
30995 chr10 43429587 43429594 phastConsElements100way lod=19 score:285, srow:984714
30995 chr10 43428168 43429460 cpgIsland CpG: 95 length:1293, cpgNum:95, gcNum:881, perCpg:14.7, perGc:68.1, obsExp:0.64, srow:2737
30995 chr10 43429461 43431460 cpgShore — values(x.gr)[overs$srow, ]:5064
  • 20 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30995 cellmeth_recounts PrEC: 6, LNCaP: 63, DU145: 6
30995 cellmeth_diffreps_PrECvsLNCaP A=0, B=15, Length=280, Event=Up, log2FC=Inf, padj=0.000225236251108575
30995 cellmeth_diffreps_PrECvsLNCaP A=0, B=20, Length=360, Event=Up, log2FC=Inf, padj=7.90773854123128e-06
30995 cellmeth_diffreps_LNCaPvsDU145 A=37.42, B=1.87, Length=600, Event=Down, log2FC=-4.32, padj=1.13917006240912e-07
30995 tcgameth site:cg09272748, B=0.19, L=0.57, H=0.53
30995 tcgameth site:cg10711775, B=0.37, L=0.62, H=0.58
30995 tcgameth site:cg11986813, B=0.12, L=0.66, H=0.58
30995 tcgameth site:cg17053251, B=0.23, L=0.64, H=0.56
30995 tcgaexp gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0