DMR 31132 chr10:94821651-94823300 (1650bp)

DMR Stats
Positionchr10:94821651-94823300 (View on UCSC)
Width1650bp
Genomic Contextexon
Nearest GenesCYP26C1 (0bp away)
ANODEV p-value4.33276431288e-06
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
31132 CYP26C1 3660 uc009xud.3 chr10 94821021 94828454 + 1650 100.0 0.52 1 0.0 E1 (0), I1 (7.03), E2 (13.64), I2 (29.45), E3 (49.94), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
31132 CYP26C1 3660 uc010qns.2 chr10 94821021 94828454 + 1650 100.0 0.39 0 0.0 E1 (0), I1 (7.03), E2 (13.64), I2 (29.45), E3 (16.73), I3 (33.27), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
31132 chr10 94821426 94822895 wgEncodeRegDnaseClusteredV2 100 score:1000, srow:161130
31132 chr10 94822961 94824575 wgEncodeRegDnaseClusteredV2 54 score:485, srow:161131
31132 chr10 94820389 94823863 wgEncodeRegTfbsClusteredV3 EZH2 score:581, expCount:5, expNums:6,36,38,40,43, expScores:291,255,243,266,292, srow:573357
31132 chr10 94821649 94822170 wgEncodeRegTfbsClusteredV3 SUZ12 score:167, expCount:1, expNums:358, expScores:90, srow:573358
31132 chr10 94821807 94821990 wgEncodeRegTfbsClusteredV3 CTCF score:142, expCount:1, expNums:635, expScores:142, srow:573359
31132 chr10 94821998 94822437 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:111, expCount:1, expNums:250, expScores:111, srow:573360
31132 chr10 94822263 94822718 wgEncodeRegTfbsClusteredV3 CCNT2 score:115, expCount:1, expNums:476, expScores:115, srow:573361
31132 chr10 94822281 94823262 wgEncodeRegTfbsClusteredV3 SUZ12 score:154, expCount:2, expNums:358,578, expScores:105,154, srow:573362
31132 chr10 94822319 94822747 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:75, expNums:0,2,5,14,16,18,20,35,37,39,42,44,48,49,137,290,463,595,597,598,601,603,604,605,606,607,609,618,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,665,668,669,671,672,673,674,675,676,677,678,682,683,684,685,686,689, expScores:175,535,833,209,535,503,732,156,423,272,623,495,177,199,734,549,979,1000,1000,343,527,1000,692,904,471,771,462,94,229,254,355,173,1000,1000,325,734,410,180,447,219,276,148,441,125,630,803,632,1000,1000,981,219,662,234,239,142,883,378,159,133,344,936,572,157,287,185,155,624,492,481,373,645,159,676,1000,291, srow:573363
31132 chr10 94822380 94822659 wgEncodeRegTfbsClusteredV3 PAX5 score:129, expCount:1, expNums:129, expScores:129, srow:573364
31132 chr10 94822384 94822639 wgEncodeRegTfbsClusteredV3 HDAC2 score:323, expCount:1, expNums:141, expScores:323, srow:573365
31132 chr10 94822391 94822680 wgEncodeRegTfbsClusteredV3 ZNF143 score:256, expCount:1, expNums:361, expScores:256, srow:573366
31132 chr10 94822402 94822651 wgEncodeRegTfbsClusteredV3 ATF3 score:100, expCount:1, expNums:135, expScores:100, srow:573367
31132 chr10 94822408 94822771 wgEncodeRegTfbsClusteredV3 ELF1 score:191, expCount:1, expNums:88, expScores:191, srow:573368
31132 chr10 94822411 94822662 wgEncodeRegTfbsClusteredV3 RAD21 score:639, expCount:3, expNums:149,355,466, expScores:639,376,217, srow:573369
31132 chr10 94822438 94822767 wgEncodeRegTfbsClusteredV3 MAX score:122, expCount:1, expNums:352, expScores:122, srow:573370
31132 chr10 94822442 94822691 wgEncodeRegTfbsClusteredV3 TEAD4 score:294, expCount:1, expNums:160, expScores:294, srow:573371
31132 chr10 94822455 94822570 wgEncodeRegTfbsClusteredV3 BACH1 score:743, expCount:1, expNums:341, expScores:743, srow:573372
31132 chr10 94821766 94821793 tfbsConsSites V$PAX5_01 score:764, zScore:1.71, srow:658046
31132 chr10 94821781 94821795 tfbsConsSites V$E2F_01 score:765, zScore:1.82, srow:658047
31132 chr10 94821858 94821873 tfbsConsSites V$ARNT_01 score:859, zScore:2.07, srow:658048
31132 chr10 94821861 94821870 tfbsConsSites V$HSF1_01 score:941, zScore:2.7, srow:658049
31132 chr10 94821873 94821887 tfbsConsSites V$CDPCR3_01 score:786, zScore:1.65, srow:658050
31132 chr10 94821889 94821902 tfbsConsSites V$ROAZ_01 score:749, zScore:1.8, srow:658051
31132 chr10 94822479 94822498 tfbsConsSites V$ARNT_02 score:782, zScore:1.82, srow:658052
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  • 25 of 93 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
31132 cellmeth_recounts PrEC: 41, LNCaP: 2999, DU145: 42
31132 cellmeth_diffreps_PrECvsLNCaP A=62, B=2382, Length=1880, Event=Up, log2FC=5.26, padj=0
31132 cellmeth_diffreps_PrECvsDU145 A=41, B=12, Length=340, Event=Down, log2FC=-1.77, padj=0.00174045876043459
31132 cellmeth_diffreps_PrECvsDU145 A=15, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.000269565104641442
31132 cellmeth_diffreps_LNCaPvsDU145 A=2546.47, B=31.8, Length=1880, Event=Down, log2FC=-6.32, padj=0
31132 cellexp id=ENSG00000187553, name=CYP26C1, PrEC=0, str=0, LNCaP=0, str=0, DU145=10, str=2
31132 tcgameth site:cg00790395, B=0.2, L=0.51, H=0.51
31132 tcgameth site:cg03208426, B=0.18, L=0.38, H=0.39
31132 tcgameth site:cg05193369, B=0.3, L=0.45, H=0.45
31132 tcgameth site:cg07606384, B=0.48, L=0.66, H=0.65
31132 tcgameth site:cg15980076, B=0.24, L=0.46, H=0.45
31132 tcgameth site:cg19305681, B=0.28, L=0.56, H=0.58
31132 tcgaexp gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0
31132 tcgaexp gene=CYP26C1, entrez=340665, pos=chr10:94821021-94828454(+), B=1, L=1, M=1, H=1