DMR 31440 chr11:693051-693300 (250bp)
| DMR Stats | |
|---|---|
| Position | chr11:693051-693300 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | DEAF1 (0bp away) |
| ANODEV p-value | 0.00187162334952 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31440 | DEAF1 | 4100 | uc001lqq.1 | chr11 | 644225 | 695740 | - | 250 | 100.0 | 0.32 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 31440 | DEAF1 | 4100 | uc021qbn.1 | chr11 | 644225 | 695740 | - | 250 | 100.0 | 0.82 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 31440 | chr11 | 692861 | 694090 | wgEncodeRegDnaseClusteredV2 | 73 | score:865, srow:185100 |
| 31440 | chr11 | 692756 | 693125 | wgEncodeRegTfbsClusteredV3 | EP300 | score:149, expCount:1, expNums:304, expScores:149, srow:640762 |
| 31440 | chr11 | 692762 | 693117 | wgEncodeRegTfbsClusteredV3 | MAX | score:392, expCount:2, expNums:223,511, expScores:392,172, srow:640763 |
| 31440 | chr11 | 692780 | 693083 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:141, expCount:1, expNums:117, expScores:141, srow:640764 |
| 31440 | chr11 | 692826 | 693089 | wgEncodeRegTfbsClusteredV3 | CTCF | score:114, expCount:1, expNums:671, expScores:114, srow:640766 |
| 31440 | chr11 | 693024 | 693303 | wgEncodeRegTfbsClusteredV3 | MAFK | score:1000, expCount:4, expNums:437,438,464,510, expScores:1000,426,1000,1000, srow:640769 |
| 31440 | chr11 | 693039 | 693314 | wgEncodeRegTfbsClusteredV3 | MAFF | score:1000, expCount:2, expNums:436,509, expScores:473,1000, srow:640770 |
| 31440 | chr11 | 693150 | 693585 | wgEncodeRegTfbsClusteredV3 | UBTF | score:153, expCount:1, expNums:549, expScores:153, srow:640771 |
| 31440 | chr11 | 693254 | 693693 | wgEncodeRegTfbsClusteredV3 | MYC | score:244, expCount:1, expNums:489, expScores:244, srow:640772 |
| 31440 | chr11 | 692762 | 694761 | cpgShore | — | values(x.gr)[overs$srow, ]:6731 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 31440 | cellmeth_recounts | PrEC: 1, LNCaP: 102, DU145: 10 |  |
| 31440 | cellmeth_diffreps_PrECvsLNCaP | A=1, B=188, Length=620, Event=Up, log2FC=7.55, padj=0 |  |
| 31440 | cellmeth_diffreps_LNCaPvsDU145 | A=198.84, B=23.39, Length=480, Event=Down, log2FC=-3.09, padj=0 |  |
| 31440 | cellexp | id=ENSG00000177030, name=DEAF1, PrEC=1426, str=914, LNCaP=5012, str=2939, DU145=1729, str=2236 |  |
| 31440 | tcgaexp | gene=DEAF1, entrez=10522, pos=chr11:644225-695740(-), B=2273, L=3287, M=3464, H=2795 |  |