DMR 31445 chr11:845201-845400 (200bp)
| DMR Stats | |
|---|---|
| Position | chr11:845201-845400 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | TSPAN4 (0bp away) |
| ANODEV p-value | 0.00792803850343 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31445 | TSPAN4 | 4117 | uc001lsd.1 | chr11 | 842824 | 867116 | + | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 31445 | TSPAN4 | 4117 | uc001lse.1 | chr11 | 842824 | 867116 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 31445 | TSPAN4 | 4117 | uc001lsf.1 | chr11 | 842824 | 867116 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 31445 | TSPAN4 | 4117 | uc001lsg.1 | chr11 | 842941 | 867116 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 31445 | TSPAN4 | 4117 | uc001lsh.1 | chr11 | 842941 | 867116 | + | 200 | 100.0 | 0.29 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 31445 | TSPAN4 | 4117 | uc001lsi.1 | chr11 | 844081 | 867116 | + | 200 | 100.0 | 0.24 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 31445 | TSPAN4 | 4117 | uc001lsj.1 | chr11 | 844446 | 867116 | + | 200 | 100.0 | 0.24 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 31445 | chr11 | 844526 | 845435 | wgEncodeRegDnaseClusteredV2 | 111 | score:1000, srow:185265 |
| 31445 | chr11 | 843702 | 845541 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:22, expNums:61,62,146,163,168,191,192,206,207,259,275,279,402,445,461,465,564,596,599,613,616,637, expScores:1000,567,277,290,404,272,522,302,323,314,471,273,355,96,201,281,200,416,380,233,226,118, srow:642046 |
| 31445 | chr11 | 845147 | 845410 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:146, expCount:1, expNums:276, expScores:146, srow:642095 |
| 31445 | chr11 | 843397 | 845396 | cpgShore | — | values(x.gr)[overs$srow, ]:6761 |
| 31445 | chr11 | 845397 | 847087 | cpgShelf | — | values(x.gr)[overs$srow, ]:5864 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 31445 | cellmeth_recounts | PrEC: 15, LNCaP: 204, DU145: 6 |  |
| 31445 | cellmeth_diffreps_PrECvsLNCaP | A=29, B=172, Length=500, Event=Up, log2FC=2.57, padj=0 |  |
| 31445 | cellmeth_diffreps_PrECvsDU145 | A=29, B=5, Length=260, Event=Down, log2FC=-2.54, padj=0.000713061448721094 |  |
| 31445 | cellmeth_diffreps_LNCaPvsDU145 | A=189.22, B=5.61, Length=600, Event=Down, log2FC=-5.08, padj=0 |  |
| 31445 | cellexp | id=ENSG00000214063, name=TSPAN4, PrEC=6613, str=4443, LNCaP=1196, str=590, DU145=4846, str=4895 |  |
| 31445 | tcgaexp | gene=TSPAN4, entrez=7106, pos=chr11:842824-867116(+), B=1547, L=1464, M=1169, H=1110 |  |