DMR Stats | |
---|---|
Position | chr11:17497401-17497750 (View on UCSC) |
Width | 350bp |
Genomic Context | intron |
Nearest Genes | ABCC8 (0bp away) |
ANODEV p-value | 0.000245485946993 |
Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
31527 | ABCC8 | 4418 | uc001mnc.3 | chr11 | 17414432 | 17498449 | - | 350 | 100.0 | 0.26 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0), I37 (0), E38 (0), I38 (0), E39 (0) | 0.0 |
31527 | ABCC8 | 4418 | uc010rcy.1 | chr11 | 17452195 | 17498449 | - | 350 | 100.0 | 0.35 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
31527 | ABCC8 | 4418 | uc021qej.1 | chr11 | 17491648 | 17498449 | - | 350 | 100.0 | 0.35 | 1 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
31527 | chr11 | 17497286 | 17497455 | wgEncodeRegDnaseClusteredV2 | 2 | score:194, srow:195298 |
31527 | chr11 | 17497506 | 17498695 | wgEncodeRegDnaseClusteredV2 | 39 | score:979, srow:195299 |
31527 | chr11 | 17497119 | 17498531 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:409, expCount:6, expNums:6,15,19,36,40,43, expScores:339,231,108,302,337,340, srow:673733 |
31527 | chr11 | 17497397 | 17498525 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:182, expCount:1, expNums:578, expScores:155, srow:673734 |
31527 | chr11 | 17497481 | 17497492 | tfbsConsSites | V$E2F_03 | score:879, zScore:2.19, srow:811216 |
31527 | chr11 | 17497558 | 17497565 | phastConsElements100way | lod=25 | score:312, srow:1392589 |
31527 | chr11 | 17497590 | 17497592 | phastConsElements100way | lod=15 | score:262, srow:1392590 |
31527 | chr11 | 17497464 | 17498626 | cpgIsland | CpG: 98 | length:1163, cpgNum:98, gcNum:720, perCpg:16.9, perGc:61.9, obsExp:0.88, srow:3925 |
31527 | chr11 | 17495464 | 17497463 | cpgShore | — | values(x.gr)[overs$srow, ]:7200 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
31527 | cellmeth_recounts | PrEC: 3, LNCaP: 111, DU145: 4 | |
31527 | cellmeth_diffreps_PrECvsLNCaP | A=5, B=89, Length=580, Event=Up, log2FC=4.15, padj=0 | |
31527 | cellmeth_diffreps_LNCaPvsDU145 | A=95.15, B=3.74, Length=540, Event=Down, log2FC=-4.67, padj=0 | |
31527 | cellexp | id=ENSG00000006071, name=ABCC8, PrEC=1, str=0, LNCaP=167, str=53, DU145=5, str=0 | |
31527 | tcgameth | site:cg06535308, B=0.17, L=0.43, H=0.43 | |
31527 | tcgaexp | gene=ABCC8, entrez=6833, pos=chr11:17414432-17498449(-), B=449, L=250, M=280, H=173 |