DMR 31973 chr12:752451-752950 (500bp)

DMR Stats
Positionchr12:752451-752950 (View on UCSC)
Width500bp
Genomic Contextpromoter
Nearest GenesNINJ2, LOC100049716 (0bp away)
ANODEV p-value0.000116684172494
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
31973 NINJ2 5889 uc001qil.3 chr12 673462 772755 - 500 100.0 2.91 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
31973 LOC100049716 5890 uc001qim.1 chr12 740057 755044 + 500 100.0 1.76 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0) 0.0
31973 NINJ2 5889 uc010sdr.2 chr12 674526 752802 - 352 70.4 1.76 0 100.0 E1 (25.2), I1 (45.2), E2 (0) 0.0
31973 NINJ2 5889 uc010sds.2 chr12 674526 772755 - 500 100.0 2.65 0 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
31973 chr12 751661 753430 wgEncodeRegDnaseClusteredV2 115 score:1000, srow:249542
31973 chr12 751715 753371 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:36, expNums:61,62,105,131,147,163,168,206,207,229,283,306,307,326,328,330,332,334,336,338,340,402,461,522,525,563,564,583,585,596,602,610,619,622,632,633, expScores:609,577,603,340,439,247,485,397,376,488,129,270,135,393,252,156,386,183,181,260,523,763,129,185,216,393,408,561,377,210,139,166,119,237,291,774, srow:857626
31973 chr12 751793 752524 wgEncodeRegTfbsClusteredV3 TAF1 score:250, expCount:5, expNums:115,127,132,157,238, expScores:215,156,189,243,133, srow:857638
31973 chr12 751881 752633 wgEncodeRegTfbsClusteredV3 PHF8 score:973, expCount:1, expNums:30, expScores:489, srow:857656
31973 chr12 751969 752792 wgEncodeRegTfbsClusteredV3 TFAP2C score:385, expCount:1, expNums:370, expScores:179, srow:857661
31973 chr12 752005 752799 wgEncodeRegTfbsClusteredV3 TFAP2A score:251, expCount:1, expNums:369, expScores:184, srow:857662
31973 chr12 752015 752534 wgEncodeRegTfbsClusteredV3 SIN3A score:184, expCount:1, expNums:357, expScores:184, srow:857663
31973 chr12 752140 752909 wgEncodeRegTfbsClusteredV3 CTCF score:800, expCount:80, expNums:0,2,5,16,18,20,24,37,42,44,48,49,137,174,213,290,463,493,595,597,601,603,604,605,606,607,609,612,627,628,629,630,631,636,638,639,640,641,642,643,644,646,647,648,650,651,652,653,654,655,656,657,659,660,661,662,663,665,666,668,669,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:379,316,318,219,217,191,123,125,140,266,239,157,703,210,776,405,135,388,800,285,249,259,151,422,135,262,208,215,323,468,310,276,503,156,162,454,249,150,422,159,169,343,789,405,418,776,567,753,461,437,546,173,344,194,296,377,265,237,275,126,132,522,100,267,185,158,340,274,206,263,282,131,254,153,140,241,364,285,282,102, srow:857666
31973 chr12 752220 752479 wgEncodeRegTfbsClusteredV3 SMC3 score:203, expCount:1, expNums:408, expScores:203, srow:857667
31973 chr12 752222 752466 wgEncodeRegTfbsClusteredV3 RAD21 score:617, expCount:4, expNums:108,149,264,355, expScores:131,617,180,237, srow:857668
31973 chr12 752222 752572 wgEncodeRegTfbsClusteredV3 ZBTB7A score:515, expCount:1, expNums:247, expScores:515, srow:857669
31973 chr12 752263 752618 wgEncodeRegTfbsClusteredV3 TAF7 score:167, expCount:1, expNums:158, expScores:167, srow:857670
31973 chr12 752332 752721 wgEncodeRegTfbsClusteredV3 MAX score:237, expCount:1, expNums:223, expScores:237, srow:857671
31973 chr12 752424 753367 wgEncodeRegTfbsClusteredV3 PML score:328, expCount:1, expNums:103, expScores:276, srow:857672
31973 chr12 752445 753104 wgEncodeRegTfbsClusteredV3 MTA3 score:345, expCount:1, expNums:95, expScores:345, srow:857673
31973 chr12 752557 752872 wgEncodeRegTfbsClusteredV3 MYC score:267, expCount:1, expNums:575, expScores:267, srow:857674
31973 chr12 752617 752956 wgEncodeRegTfbsClusteredV3 TAF1 score:153, expCount:1, expNums:115, expScores:153, srow:857675
31973 chr12 752674 753043 wgEncodeRegTfbsClusteredV3 RUNX3 score:478, expCount:1, expNums:109, expScores:478, srow:857676
31973 chr12 752890 753586 wgEncodeRegTfbsClusteredV3 ELK4 score:169, expCount:1, expNums:388, expScores:127, srow:857677
31973 chr12 752209 752655 cpgIsland CpG: 47 length:447, cpgNum:47, gcNum:325, perCpg:21, perGc:72.7, obsExp:0.8, srow:4988
31973 chr12 752656 754655 cpgShore — values(x.gr)[overs$srow, ]:9164
  • 21 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
31973 cellmeth_recounts PrEC: 68, LNCaP: 2129, DU145: 1
31973 cellmeth_diffreps_PrECvsLNCaP A=197, B=3719, Length=2420, Event=Up, log2FC=4.24, padj=0
31973 cellmeth_diffreps_PrECvsDU145 A=100, B=1, Length=500, Event=Down, log2FC=-6.64, padj=0
31973 cellmeth_diffreps_LNCaPvsDU145 A=3988.61, B=14.03, Length=2620, Event=Down, log2FC=-8.15, padj=0
31973 cellexp id=ENSG00000171840, name=NINJ2, PrEC=12, str=11, LNCaP=1, str=0, DU145=44, str=45
31973 cellexp id=ENSG00000177406, name=RP11-218M22.1, PrEC=99, str=160, LNCaP=3, str=1, DU145=195, str=93
31973 tcgameth site:cg19697239, B=0.26, L=0.55, H=0.51
31973 tcgaexp gene=NINJ2, entrez=4815, pos=chr12:673462-772755(-), B=78, L=82, M=82, H=93
31973 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
31973 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045