DMR 320 chr1:68516001-68516200 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:68516001-68516200 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | GNG12-AS1, DIRAS3 (0bp away) |
| ANODEV p-value | 0.00146033041311 |
| Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 320 | GNG12-AS1 | 1015 | uc001deb.2 | chr1 | 68297971 | 68668670 | + | 200 | 100.0 | 0.12 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 320 | GNG12-AS1 | 1015 | uc001dec.2 | chr1 | 68297971 | 68668670 | + | 200 | 100.0 | 0.15 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 320 | DIRAS3 | 1016 | uc001ded.3 | chr1 | 68511645 | 68516481 | - | 200 | 100.0 | 1.23 | 0 | 100.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 320 | chr1 | 68515981 | 68516210 | wgEncodeRegDnaseClusteredV2 | 30 | score:372, srow:48158 |
| 320 | chr1 | 68515948 | 68516211 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:1000, expCount:6, expNums:172,212,277,343,426,477, expScores:194,395,658,444,750,1000, srow:169895 |
| 320 | chr1 | 68513006 | 68516236 | cpgShore | — | values(x.gr)[overs$srow, ]:2241 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 320 | cellmeth_recounts | PrEC: 5, LNCaP: 3, DU145: 0 |  |
| 320 | cellmeth_diffreps_PrECvsDU145 | A=26, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.82506503014393e-07 |  |
| 320 | cellexp | id=ENSG00000162595, name=DIRAS3, PrEC=2, str=11, LNCaP=1, str=3, DU145=5, str=7 |  |
| 320 | cellexp | id=ENSG00000232284, name=GNG12-AS1, PrEC=39, str=91, LNCaP=55, str=27, DU145=30, str=36 |  |
| 320 | tcgameth | site:cg11465163, B=0.6, L=0.57, H=0.6 |  |
| 320 | tcgameth | site:cg12070746, B=0.45, L=0.44, H=0.43 |  |
| 320 | tcgaexp | gene=DIRAS3, entrez=9077, pos=chr1:68511645-68516481(-), B=222, L=118, M=135, H=115 |  |
| 320 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |