DMR 32061 chr12:30353851-30354550 (700bp)

DMR Stats
Positionchr12:30353851-30354550 (View on UCSC)
Width700bp
Genomic Contextintergenic
Nearest GenesTMTC1 (416158bp away)
ANODEV p-value0.000567772138399
FrequenciesBenign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
32061 chr12 30353806 30354075 wgEncodeRegDnaseClusteredV2 37 score:650, srow:263539
32061 chr12 30354301 30354695 wgEncodeRegDnaseClusteredV2 16 score:206, srow:263540
32061 chr12 30353860 30354103 wgEncodeRegTfbsClusteredV3 REST score:123, expCount:1, expNums:144, expScores:123, srow:903009
32061 chr12 30353976 30354759 wgEncodeRegTfbsClusteredV3 EZH2 score:210, expCount:1, expNums:36, expScores:210, srow:903010
32061 chr12 30354261 30354624 wgEncodeRegTfbsClusteredV3 CTCF score:428, expCount:9, expNums:635,644,659,661,662,673,674,676,677, expScores:428,102,191,199,309,291,147,143,345, srow:903011
32061 chr12 30354345 30354560 wgEncodeRegTfbsClusteredV3 RAD21 score:236, expCount:1, expNums:264, expScores:236, srow:903012
32061 chr12 30354398 30354404 phastConsElements100way lod=12 score:240, srow:1915133
32061 chr12 30354412 30354418 phastConsElements100way lod=13 score:247, srow:1915134
32061 chr12 30354425 30354441 phastConsElements100way lod=56 score:392, srow:1915135
32061 chr12 30354444 30354486 phastConsElements100way lod=212 score:524, srow:1915136
32061 chr12 30354488 30354513 phastConsElements100way lod=100 score:449, srow:1915137
32061 chr12 30354522 30354526 phastConsElements100way lod=15 score:262, srow:1915138
32061 chr12 30354537 30354630 phastConsElements100way lod=496 score:608, srow:1915139
32061 chr12 30353916 30354612 cpgIsland CpG: 56 length:697, cpgNum:56, gcNum:452, perCpg:16.1, perGc:64.8, obsExp:0.77, srow:5189
32061 chr12 30351916 30353915 cpgShore — values(x.gr)[overs$srow, ]:9547
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
32061 cellmeth_recounts PrEC: 6, LNCaP: 42, DU145: 20
32061 cellmeth_diffreps_PrECvsLNCaP A=1, B=21, Length=320, Event=Up, log2FC=4.39, padj=0.000108416961794953
32061 cellexp id=ENSG00000257262, name=RP11-776A13.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
32061 tcgameth site:cg14031402, B=0.25, L=0.41, H=0.36
32061 tcgameth site:cg16242629, B=0.4, L=0.69, H=0.63
32061 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
32061 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045