DMR 32125 chr12:52301451-52301650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr12:52301451-52301650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | ACVRL1 (0bp away) |
| ANODEV p-value | 0.0104741356953 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32125 | ACVRL1 | 6435 | uc001rzj.3 | chr12 | 52301202 | 52317145 | + | 200 | 100.0 | 0.08 | 0 | 100.0 | E1 (14.5), I1 (86), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 32125 | ACVRL1 | 6435 | uc021qxz.1 | chr12 | 52300692 | 52307134 | + | 200 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (0), E2 (14.5), I2 (86), E3 (0), I3 (0), E4 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32125 | chr12 | 52299846 | 52301955 | wgEncodeRegDnaseClusteredV2 | 71 | score:1000, srow:271133 |
| 32125 | chr12 | 52301063 | 52302118 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:338, expCount:3, expNums:6,15,40, expScores:324,232,338, srow:933219 |
| 32125 | chr12 | 52301086 | 52301875 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:539, expCount:4, expNums:206,207,461,619, expScores:342,306,199,294, srow:933220 |
| 32125 | chr12 | 52301474 | 52301485 | tfbsConsSites | V$AREB6_02 | score:904, zScore:1.78, srow:1151631 |
| 32125 | chr12 | 52301477 | 52301485 | phastConsElements100way | lod=48 | score:377, srow:1980233 |
| 32125 | chr12 | 52300802 | 52301583 | cpgIsland | CpG: 78 | length:782, cpgNum:78, gcNum:553, perCpg:19.9, perGc:70.7, obsExp:0.8, srow:5351 |
| 32125 | chr12 | 52301584 | 52303583 | cpgShore | — | values(x.gr)[overs$srow, ]:9851 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32125 | cellmeth_recounts | PrEC: 12, LNCaP: 427, DU145: 19 |  |
| 32125 | cellmeth_diffreps_PrECvsLNCaP | A=23, B=706, Length=1100, Event=Up, log2FC=4.94, padj=0 |  |
| 32125 | cellmeth_diffreps_LNCaPvsDU145 | A=755.81, B=31.8, Length=1100, Event=Down, log2FC=-4.57, padj=0 |  |
| 32125 | cellexp | id=ENSG00000139567, name=ACVRL1, PrEC=4, str=14, LNCaP=4, str=2, DU145=2, str=1 |  |
| 32125 | tcgameth | site:cg23640701, B=0.72, L=0.79, H=0.77 |  |
| 32125 | tcgameth | site:cg25749512, B=0.53, L=0.71, H=0.67 |  |
| 32125 | tcgaexp | gene=ACVRL1, entrez=94, pos=chr12:52300692-52317145(+), B=1370, L=778, M=730, H=852 |  |
| 32125 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32125 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |