DMR 32169 chr12:54423301-54423800 (500bp)

DMR Stats
Positionchr12:54423301-54423800 (View on UCSC)
Width500bp
Genomic Context3' end
Nearest GenesHOXC6, HOXC5, HOXC4 (0bp away)
ANODEV p-value3.94993398694e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
32169 HOXC6 6515 uc001ses.3 chr12 54410642 54424607 + 500 100.0 0.64 0 0.0 E1 (0), I1 (0), E2 (0), I2 (27.6), E3 (72.4) 38.6
32169 HOXC5 6516 uc001set.3 chr12 54410642 54429144 + 500 100.0 0.64 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
32169 HOXC4 6514 uc001seu.3 chr12 54410642 54449814 + 500 100.0 0.72 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
32169 HOXC6 6515 uc001sev.3 chr12 54422194 54424607 + 500 100.0 0.78 0 0.0 E1 (0), I1 (27.6), E2 (72.4) 38.6
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
32169 chr12 54423306 54423575 wgEncodeRegDnaseClusteredV2 11 score:472, srow:273192
32169 chr12 54423666 54424035 wgEncodeRegDnaseClusteredV2 12 score:442, srow:273193
32169 chr12 54423227 54425946 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:4, expNums:3,6,21,43, expScores:161,266,331,312, srow:942581
32169 chr12 54423390 54424199 wgEncodeRegTfbsClusteredV3 SUZ12 score:158, expCount:2, expNums:358,578, expScores:158,141, srow:942582
32169 chr12 54423443 54424042 wgEncodeRegTfbsClusteredV3 CTBP2 score:234, expCount:1, expNums:348, expScores:234, srow:942583
32169 chr12 54423497 54424112 wgEncodeRegTfbsClusteredV3 CHD1 score:256, expCount:1, expNums:4, expScores:256, srow:942584
32169 chr12 54423626 54423949 wgEncodeRegTfbsClusteredV3 SP1 score:163, expCount:1, expNums:153, expScores:163, srow:942585
32169 chr12 54423287 54423315 tfbsConsSites V$MYOGNF1_01 score:738, zScore:1.73, srow:1161854
32169 chr12 54423333 54423350 tfbsConsSites V$NF1_Q6 score:876, zScore:1.78, srow:1161855
32169 chr12 54423408 54423420 tfbsConsSites V$NKX61_01 score:827, zScore:1.69, srow:1161856
32169 chr12 54423413 54423426 tfbsConsSites V$FAC1_01 score:908, zScore:3.2, srow:1161857
32169 chr12 54423454 54423469 tfbsConsSites V$ELK1_01 score:893, zScore:2.61, srow:1161858
32169 chr12 54423457 54423466 tfbsConsSites V$NRF2_01 score:896, zScore:1.82, srow:1161859
32169 chr12 54423466 54423477 tfbsConsSites V$E2F_03 score:847, zScore:1.66, srow:1161860
32169 chr12 54423528 54423539 tfbsConsSites V$E4BP4_01 score:823, zScore:1.71, srow:1161861
32169 chr12 54423619 54423626 tfbsConsSites V$ATF6_01 score:868, zScore:1.67, srow:1161862
32169 chr12 54423621 54423632 tfbsConsSites V$NFAT_Q6 score:938, zScore:1.97, srow:1161863
32169 chr12 54423625 54423639 tfbsConsSites V$ISRE_01 score:813, zScore:2.25, srow:1161864
32169 chr12 54423626 54423655 tfbsConsSites V$PAX4_04 score:731, zScore:1.79, srow:1161865
32169 chr12 54423658 54423685 tfbsConsSites V$PAX5_02 score:772, zScore:1.84, srow:1161866
32169 chr12 54423659 54423673 tfbsConsSites V$TAXCREB_01 score:818, zScore:2.43, srow:1161867
32169 chr12 54423666 54423678 tfbsConsSites V$MAZR_01 score:892, zScore:2.18, srow:1161868
32169 chr12 54423666 54423678 tfbsConsSites V$MZF1_02 score:899, zScore:2.43, srow:1161869
32169 chr12 54423686 54423697 tfbsConsSites V$EGR3_01 score:836, zScore:1.91, srow:1161870
32169 chr12 54423718 54423733 tfbsConsSites V$EVI1_01 score:759, zScore:1.96, srow:1161871
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Omics Overlaps

Dmrid Omic Set Data Plot
32169 cellmeth_recounts PrEC: 4, LNCaP: 49, DU145: 37
32169 cellmeth_diffreps_PrECvsLNCaP A=6, B=38, Length=380, Event=Up, log2FC=2.66, padj=1.88996219375202e-05
32169 cellmeth_diffreps_PrECvsDU145 A=1, B=27, Length=340, Event=Up, log2FC=4.75, padj=3.12579734977234e-06
32169 cellexp id=ENSG00000197757, name=HOXC6, PrEC=12, str=94, LNCaP=1389, str=1737, DU145=275, str=186
32169 cellexp id=ENSG00000198353, name=HOXC4, PrEC=145, str=140, LNCaP=387, str=219, DU145=51, str=89
32169 tcgameth site:cg03255182, B=0.31, L=0.57, H=0.54
32169 tcgameth site:cg07687119, B=0.19, L=0.55, H=0.5
32169 tcgameth site:cg23618344, B=0.17, L=0.61, H=0.55
32169 tcgaexp gene=HOXC4, entrez=3221, pos=chr12:54410642-54449814(+), B=56, L=167, M=231, H=262
32169 tcgaexp gene=HOXC5, entrez=3222, pos=chr12:54410642-54429144(+), B=17, L=47, M=67, H=71
32169 tcgaexp gene=HOXC6, entrez=3223, pos=chr12:54410642-54424607(+), B=168, L=698, M=683, H=795
32169 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
32169 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045