DMR 32215 chr12:65217951-65219800 (1850bp)
| DMR Stats | |
|---|---|
| Position | chr12:65217951-65219800 (View on UCSC) |
| Width | 1850bp |
| Genomic Context | promoter |
| Nearest Genes | TBC1D30 (0bp away) |
| ANODEV p-value | 2.14693978326e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 4.0 (44.44 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32215 | TBC1D30 | 6691 | uc001ssh.2 | chr12 | 65179791 | 65274798 | + | 1850 | 100.0 | 0.38 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 32215 | TBC1D30 | 6691 | uc001ssi.2 | chr12 | 65218352 | 65272411 | + | 1449 | 78.32 | 0.35 | 0 | 48.7 | E1 (24.97), I1 (53.41), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 32215 | TBC1D30 | 6691 | uc010sss.2 | chr12 | 65218352 | 65269164 | + | 1449 | 78.32 | 5.77 | 0 | 48.7 | E1 (24.97), I1 (53.41), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 32215 | TBC1D30 | 6691 | uc010sst.2 | chr12 | 65218352 | 65274798 | + | 1449 | 78.32 | 0.57 | 0 | 48.7 | E1 (24.97), I1 (53.41), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32215 | chr12 | 65218086 | 65218575 | wgEncodeRegDnaseClusteredV2 | 68 | score:1000, srow:277644 |
| 32215 | chr12 | 65218586 | 65219015 | wgEncodeRegDnaseClusteredV2 | 15 | score:362, srow:277645 |
| 32215 | chr12 | 65219106 | 65219915 | wgEncodeRegDnaseClusteredV2 | 24 | score:720, srow:277646 |
| 32215 | chr12 | 65217891 | 65220414 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:531, expCount:8, expNums:6,15,19,21,36,38,40,43, expScores:292,250,135,332,271,243,216,262, srow:962715 |
| 32215 | chr12 | 65217909 | 65218592 | wgEncodeRegTfbsClusteredV3 | PML | score:314, expCount:1, expNums:103, expScores:314, srow:962716 |
| 32215 | chr12 | 65217999 | 65218838 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:6, expNums:104,105,306,632,633,634, expScores:483,1000,354,1000,596,591, srow:962717 |
| 32215 | chr12 | 65218018 | 65218487 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:608, expCount:1, expNums:109, expScores:428, srow:962718 |
| 32215 | chr12 | 65218034 | 65218571 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:1000, expCount:1, expNums:572, expScores:503, srow:962719 |
| 32215 | chr12 | 65218039 | 65218268 | wgEncodeRegTfbsClusteredV3 | CTCF | score:193, expCount:3, expNums:628,630,631, expScores:181,178,193, srow:962720 |
| 32215 | chr12 | 65218082 | 65218397 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:156, expCount:1, expNums:292, expScores:156, srow:962721 |
| 32215 | chr12 | 65218098 | 65218461 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:255, expCount:1, expNums:88, expScores:255, srow:962722 |
| 32215 | chr12 | 65218112 | 65218441 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:241, expCount:1, expNums:284, expScores:241, srow:962723 |
| 32215 | chr12 | 65218139 | 65218574 | wgEncodeRegTfbsClusteredV3 | MAX | score:178, expCount:1, expNums:296, expScores:178, srow:962724 |
| 32215 | chr12 | 65218146 | 65218581 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:167, expCount:1, expNums:298, expScores:167, srow:962725 |
| 32215 | chr12 | 65218148 | 65218583 | wgEncodeRegTfbsClusteredV3 | MAZ | score:336, expCount:1, expNums:297, expScores:336, srow:962726 |
| 32215 | chr12 | 65218192 | 65218429 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:537, expCount:1, expNums:368, expScores:537, srow:962727 |
| 32215 | chr12 | 65218200 | 65218575 | wgEncodeRegTfbsClusteredV3 | TBP | score:146, expCount:1, expNums:359, expScores:146, srow:962728 |
| 32215 | chr12 | 65218213 | 65218664 | wgEncodeRegTfbsClusteredV3 | MYC | score:641, expCount:3, expNums:623,624,626, expScores:239,432,641, srow:962729 |
| 32215 | chr12 | 65218215 | 65218538 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:142, expCount:1, expNums:215, expScores:142, srow:962730 |
| 32215 | chr12 | 65218226 | 65218475 | wgEncodeRegTfbsClusteredV3 | NRF1 | score:280, expCount:1, expNums:303, expScores:280, srow:962731 |
| 32215 | chr12 | 65218258 | 65218439 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:668, expCount:2, expNums:87,216, expScores:668,319, srow:962732 |
| 32215 | chr12 | 65218502 | 65218777 | wgEncodeRegTfbsClusteredV3 | ESR1 | score:138, expCount:2, expNums:269,270, expScores:138,138, srow:962733 |
| 32215 | chr12 | 65218600 | 65219199 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:170, expCount:1, expNums:348, expScores:170, srow:962734 |
| 32215 | chr12 | 65218813 | 65219076 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:220, expCount:1, expNums:86, expScores:220, srow:962735 |
| 32215 | chr12 | 65219002 | 65219326 | wgEncodeRegTfbsClusteredV3 | MYC | score:294, expCount:2, expNums:624,626, expScores:294,280, srow:962736 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32215 | cellmeth_recounts | PrEC: 0, LNCaP: 1255, DU145: 92 |  |
| 32215 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=996, Length=2000, Event=Up, log2FC=Inf, padj=0 |  |
| 32215 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 32215 | cellmeth_diffreps_PrECvsDU145 | A=0, B=18, Length=380, Event=Up, log2FC=Inf, padj=3.84450226825195e-05 |  |
| 32215 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=240, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 32215 | cellmeth_diffreps_PrECvsDU145 | A=0, B=18, Length=360, Event=Up, log2FC=Inf, padj=3.84450226825195e-05 |  |
| 32215 | cellmeth_diffreps_LNCaPvsDU145 | A=1064.77, B=67.35, Length=1960, Event=Down, log2FC=-3.98, padj=0 |  |
| 32215 | cellexp | id=ENSG00000111490, name=TBC1D30, PrEC=113, str=44, LNCaP=2147, str=2716, DU145=1374, str=1531 |  |
| 32215 | tcgameth | site:cg00494665, B=0.17, L=0.39, H=0.32 |  |
| 32215 | tcgameth | site:cg03030717, B=0.12, L=0.44, H=0.31 |  |
| 32215 | tcgameth | site:cg06092265, B=0.23, L=0.71, H=0.66 |  |
| 32215 | tcgameth | site:cg06234063, B=0.17, L=0.56, H=0.52 |  |
| 32215 | tcgameth | site:cg08815398, B=0.05, L=0.4, H=0.32 |  |
| 32215 | tcgameth | site:cg09486902, B=0.12, L=0.64, H=0.59 |  |
| 32215 | tcgameth | site:cg11832404, B=0.15, L=0.37, H=0.27 |  |
| 32215 | tcgameth | site:cg23013309, B=0.13, L=0.63, H=0.56 |  |
| 32215 | tcgameth | site:cg23684878, B=0.04, L=0.31, H=0.2 |  |
| 32215 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32215 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |